Basic Information
Locus ID:
Ag2G01222
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 78993464 | 78996693 | + | Ag2G01222 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 38,307.57 Da | 52.50 | 96.05 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09617 | Peptidase_C12_UCH37_BAP1 | 3 | 220 | 3.79127E-130 | - |
| Pfam | PF18031 | Ubiquitin carboxyl-terminal hydrolases | 274 | 319 | 1.6E-18 | IPR041507 |
| Pfam | PF01088 | Ubiquitin carboxyl-terminal hydrolase, family 1 | 3 | 206 | 1.1E-70 | IPR001578 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 2 | 223 | 2.78E-71 | IPR038765 |
| Gene3D | G3DSA:3.40.532.10 | - | 1 | 224 | 1.2E-85 | IPR036959 |
| Gene3D | G3DSA:1.20.58.860 | - | 225 | 314 | 4.9E-27 | - |
| PIRSF | PIRSF038120 | Uch | 1 | 334 | 1.9E-128 | IPR017390 |
| PRINTS | PR00707 | Ubiquitin C-terminal hydrolase (C12) family signature | 168 | 178 | 3.3E-11 | IPR001578 |
| PRINTS | PR00707 | Ubiquitin C-terminal hydrolase (C12) family signature | 76 | 93 | 3.3E-11 | IPR001578 |
| PRINTS | PR00707 | Ubiquitin C-terminal hydrolase (C12) family signature | 40 | 52 | 3.3E-11 | IPR001578 |
| PRINTS | PR00707 | Ubiquitin C-terminal hydrolase (C12) family signature | 152 | 163 | 3.3E-11 | IPR001578 |
| PRINTS | PR00707 | Ubiquitin C-terminal hydrolase (C12) family signature | 5 | 22 | 3.3E-11 | IPR001578 |
| Coils | Coil | Coil | 218 | 252 | - | - |
| Coils | Coil | Coil | 260 | 294 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65650.1 | Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1. | 0 |
| RefSeq | XP_017253911.1 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 2-like [Daucus carota subsp. sativus] | 0 |
| O04482 | Ubiquitin carboxyl-terminal hydrolase 2 OS=Arabidopsis thaliana OX=3702 GN=UCH2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A164Z587 | Ubiquitin carboxyl-terminal hydrolase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_018595 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 37.613487 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 26.010401 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 30.010719 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 29.469984 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 29.263098 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 35.575321 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 35.786552 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 30.498524 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 65.36599 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 66.432289 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 71.38118 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 62.297726 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 63.060844 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 56.464832 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 30.686049 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 27.902359 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 35.721252 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 31.370831 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 31.471428 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 34.514183 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 37.703018 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 47.29874 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 49.33897 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 53.495354 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 46.549145 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 35.003212 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 28.381126 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 28.701405 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 32.330303 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 33.179279 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 29.833542 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 24.890999 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 31.12933 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 49.081955 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 36.342384 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 24.989748 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 23.629511 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 29.627401 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 46.838951 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 30.433573 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 27.457745 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 45.63343 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 46.334057 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 33.950371 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 43.647514 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 52.225361 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 40.897972 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 73.319763 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 72.603203 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 61.793915 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg8438 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5417 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah003883 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g098720 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24042, Sbi_jg7893 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12155 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010654 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl52237, Sgl57495 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000005128, gene:ENSEOMG00000005386 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0005730, CQ.Regalona.r1.5BG0006050 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30080670, pistato.v30080730 |
| Apiaceae | Apium graveolens | 1 | Ag2G01222 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G018690, COCNU_10G007490 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103710351, gene-LOC103715643, gene-LOC120103645 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1857.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G08390, Ftri9G11165 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G65650.1, AT5G16310.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10014049m.g.v1.0, Thhalv10018850m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp5g20610.v2.2, Sp6g27850.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g043190.2N, BniB08g007790.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2497 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2636 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g00180 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0191s00013.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g29180 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.2575 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00036702 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G08135, Lb2G08209, Lb4G24670 |
| Poaceae | Echinochloa crus-galli | 8 | AH07.3987, AH08.2407, BH07.3802, BH08.2134, BH08.2579 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0150960, gene-QOZ80_2BG0206380 ... |
| Poaceae | Hordeum vulgare | 5 | HORVU.MOREX.r3.5HG0518770.1, HORVU.MOREX.r3.6HG0568820.1 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_021049, gene-QYE76_026443, gene-QYE76_053556 ... |
| Poaceae | Oryza coarctata | 4 | Oco03G004080, Oco03G025690, Oco04G004030, Oco04G026170 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g08370.1, LOC_Os02g57630.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_04G324200, gene-BS78_07G230100 ... |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0202317, Pt_Chr0502870, Pt_Chr0604541, Pt_Chr0605619 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr13G000540, Chr15G000430, Chr16G019200, Chr17G018120 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G307200, Tel6E01G734100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC6AG020380, gene_TRIDC6AG059120 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS6A02G147800.1, TraesCS6A02G402500.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb038900_P001, Zm00001eb175830_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-39775, nbis-gene-42885 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g17445, Zma_g23445 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.3264, evm.TU.LG16.336 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g07790 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1347 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-20143, nbisL1-mrna-20158, nbisL1-mrna-9769 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13498 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011622 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9020 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18547 |
| Salicaceae | Populus euphratica | 2 | populus_peu24441, populus_peu25586 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631615 |
| Solanaceae | Solanum chilense | 1 | SOLCI005925200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031298 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.23317_chr05_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3085 |
| Zosteraceae | Zostera marina | 1 | Zosma05g31750.v3.1 |