Basic Information
Locus ID:
Ag2G01205
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Probably inactive leucine-rich repeat receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 76264528 | 76267564 | + | Ag2G01205 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.84 | 67,646.10 Da | 22.37 | 93.66 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 308 | 575 | 4.01317E-95 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 305 | 517 | 1.2E-37 | IPR001245 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 32 | 73 | 1.6E-5 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 31 | 198 | 1.25E-24 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 280 | 575 | 9.43E-71 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 263 | 376 | 2.3E-37 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 31 | 219 | 7.6E-41 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 377 | 597 | 6.7E-53 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 302 | 585 | 31.933666 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G48380.1 | BAK1-interacting receptor-like kinase 1. Encodes a BAK1-interacting receptor-like kinase named BIR1. Negatively regulates multiple plant resistance signaling pathways, one of which is the SOBIR1(AT2G31880)-dependent pathway. | 0 |
| RefSeq | XP_017253108.1 | PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 [Daucus carota subsp. sativus] | 0 |
| Q9ASS4 | Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 OS=Arabidopsis thaliana OX=3702 GN=At5g48380 PE=1 SV=1 | 0 | |
| TrEMBL | A0A164Z5I3 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_018606 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 17.245422 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 21.638189 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 21.701019 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 23.985746 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 24.950064 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 28.196838 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 27.884193 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 20.476473 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 38.907032 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 34.224689 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 37.240143 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 27.006693 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 34.80072 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 25.951742 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 38.602264 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 33.922508 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 24.073948 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 71.212578 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 30.136379 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 94.71875 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 97.752647 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 33.108505 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 27.810987 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 28.50622 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 39.065727 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 30.29953 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 24.02813 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 25.525372 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 26.731066 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 19.633974 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 14.690008 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 17.19171 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 80.399277 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 49.757065 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 76.096123 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 87.185928 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 67.086601 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 76.602058 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 22.68824 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 46.88007 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 19.105738 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 137.934479 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 137.233459 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 151.345596 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 114.68959 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 120.55986 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 103.471405 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 23.697517 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 22.300636 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 26.052225 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 11 | jg16756, jg16757, jg16758, jg16759, jg17838, jg19809 ... |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_10153, gene_13582 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah000412, Ah005143 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g074560, BVRB_5g119000 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg17393, Sbi_jg30692, Sbi_jg58583, Sbi_jg62043 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg28444, Seu_jg657 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00005006, GOSA_00015546 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl24278, Sgl29453, Sgl55057, Sgl60307, Sgl60319 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000004129, gene:ENSEOMG00000011914 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.4AG0002840, CQ.Regalona.r1.4BG0002980 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30025790, pistato.v30025800 |
| Apiaceae | Apium graveolens | 2 | Ag11G03059, Ag2G01205 |
| Arecaceae | Cocos nucifera | 3 | COCNU_01G021860, COCNU_01G021870, scaffold002973G000110 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103699321, gene-LOC103706061, gene-LOC103715226 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.501.V1.1, AsparagusV1_09.519.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri10G24842, Ftri12G25351, Ftri9G31259 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G48380.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10003825m.g.v1.0, Thhalv10015945m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g18730.v2.2 |
| Brassicaceae | Brassica nigra | 7 | BniB02g069530.2N, BniB03g023960.2N, BniB04g006010.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq05G1234, Ceq06G0320, Ceq06G2273 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl05G1241, Cgl06G0348, Cgl06G2385 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g11460 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g07200 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-6426 |
| Nitrariaceae | Nitraria sibirica | 5 | evm.TU.LG03.1812, evm.TU.LG03.874, evm.TU.LG04.2357 ... |
| Plantaginaceae | Plantago ovata | 2 | Pov_00036673, Pov_00036674 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G15845, Lb3G15847 |
| Poaceae | Echinochloa crus-galli | 7 | AH02.4147, AH04.727, BH04.768, CH02.2750, CH02.4196 ... |
| Poaceae | Eleusine coracana subsp. coracana | 7 | gene-QOZ80_1AG0042710, gene-QOZ80_1AG0042740 ... |
| Poaceae | Hordeum vulgare | 7 | HORVU.MOREX.r3.1HG0066190.1, HORVU.MOREX.r3.3HG0306330.1 ... |
| Poaceae | Lolium multiflorum | 10 | gene-QYE76_013236, gene-QYE76_013249, gene-QYE76_017956 ... |
| Poaceae | Oryza coarctata | 5 | Oco01G027020, Oco02G028110, Oco09G009680, Oco10G009810 ... |
| Poaceae | Oryza sativa | 6 | LOC_Os01g66740.1, LOC_Os01g66760.1, LOC_Os01g66820.1 ... |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_03G364500, gene-BS78_05G113600 ... |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0104030, Pt_Chr0104071, Pt_Chr0107760, Pt_Chr0505243 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr01G020490, Chr08G020420, Chr12G017560, Chr18G009410 ... |
| Poaceae | Thinopyrum elongatum | 8 | Tel1E01G428300, Tel2E01G597900, Tel3E01G548200 ... |
| Poaceae | Triticum dicoccoides | 14 | gene_TRIDC1AG038800, gene_TRIDC1BG044020 ... |
| Poaceae | Triticum aestivum | 30 | TraesCS1A02G259600.1, TraesCS1B02G269900.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb112380_P001, Zm00001eb288130_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-13938, nbis-gene-23880, nbis-gene-48235 ... |
| Poaceae | Zoysia macrostachya | 5 | Zma_g17713, Zma_g17716, Zma_g17719, Zma_g27198, Zma_g28249 |
| Portulacaceae | Portulaca oleracea | 9 | evm.TU.LG01.2375, evm.TU.LG02.1049, evm.TU.LG14.1544 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g05680 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.1691, evm.TU.Scaffold_9_RagTag.1485 |
| Rhizophoraceae | Carallia pectinifolia | 5 | nbisL1-mrna-12187, nbisL1-mrna-12188, nbisL1-mrna-20642 ... |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-4167, nbisL1-mrna-8382 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-10832, nbisL1-mrna-10833, nbisL1-mrna-21474 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.936, evm.TU.utg000006l.976 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-10509, nbisL1-mrna-13921, nbisL1-mrna-20890 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-15621, nbisL1-mrna-15622, nbisL1-mrna-4600 |
| Salicaceae | Populus euphratica | 4 | populus_peu06644, populus_peu20534, populus_peu23847 ... |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132604312, gene-LOC132625734, gene-LOC132627098 ... |
| Solanaceae | Solanum chilense | 2 | SOLCI005023100, SOLCI005243000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107023385 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.28008_chr04_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G2982 |
| Zosteraceae | Zostera marina | 2 | Zosma04g16460.v3.1, Zosma05g01540.v3.1 |