Basic Information
Locus ID:
Ag2G01147
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Leucine Rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 69241734 | 69246234 | - | Ag2G01147 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.07 | 73,597.80 Da | 36.34 | 114.54 | 0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 454 | 478 | 0.021 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 327 | 349 | 0.6 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 405 | 427 | 6.8E-5 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 280 | 500 | 4.71E-42 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 64 | 276 | 1.77E-32 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 454 | 641 | 1.56E-13 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 399 | 647 | 1.5E-44 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 5 | 276 | 1.7E-35 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 288 | 398 | 9.8E-17 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 228 | 252 | 360.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 253 | 278 | 1.4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 481 | 506 | 0.0048 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 100 | 125 | 13.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 455 | 480 | 1.7E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 430 | 454 | 140.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 532 | 557 | 0.0035 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 379 | 404 | 9.1 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 177 | 202 | 24.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 405 | 429 | 7.3 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 203 | 227 | 33.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 126 | 151 | 120.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 353 | 378 | 1.1 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 327 | 352 | 4.3E-5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 152 | 176 | 1.9 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 73 | 98 | 13.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 302 | 326 | 210.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 558 | 582 | 4.4 | IPR006553 |
| Coils | Coil | Coil | 134 | 157 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01720.1 | RNI-like superfamily protein. | 0 |
| RefSeq | XP_017253698.1 | PREDICTED: F-box/LRR-repeat protein 3-like [Daucus carota subsp. sativus] | 0 |
| Q8RWU5 | F-box/LRR-repeat protein 3 OS=Arabidopsis thaliana OX=3702 GN=FBL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A162A4Y5 | F-box/LRR-repeat protein 3-like OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_018662 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 4.314456 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 4.362088 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 3.417719 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 5.070397 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 4.484114 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 13.286908 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 7.455942 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 6.671662 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 8.312074 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 7.473131 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 8.93256 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 7.01832 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 8.245986 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 7.091209 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 7.478374 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 4.208884 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 7.258562 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 6.769892 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 6.892116 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 6.558856 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 9.464983 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 9.86317 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 8.214831 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 7.54083 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 8.396736 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 12.30434 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 5.892991 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 11.579517 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 9.470585 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 9.764101 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 9.474469 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 8.467216 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 27.47167 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 15.193017 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 27.783352 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 13.869538 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 6.24463 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 8.025301 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 7.99342 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 15.47107 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 11.379827 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 8.868561 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 7.93213 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 7.124691 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 4.815521 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 8.458518 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 6.447643 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 9.555387 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 8.8168 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 12.448345 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg1418, jg16690, jg21205, jg3211 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_14544, gene_5979 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah005710, Ah031358 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_7g158000, BVRB_7g175510 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg2264, Sbi_jg26871, Sbi_jg33702, Sbi_jg33703 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg2491, Seu_jg8392 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00003029, GOSA_00005995, GOSA_00015377 |
| Amaranthaceae | Suaeda glauca | 7 | Sgl24439, Sgl29614, Sgl70996, Sgl73103, Sgl74546, Sgl74587 ... |
| Amaranthaceae | Chenopodium album | 8 | gene:ENSEOMG00000006019, gene:ENSEOMG00000007524 ... |
| Amaranthaceae | Chenopodium quinoa | 6 | CQ.Regalona.r1.2BG0010670, CQ.Regalona.r1.2BG0010680 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30268050 |
| Apiaceae | Apium graveolens | 3 | Ag10G00968, Ag2G01147, Ag7G01578 |
| Arecaceae | Cocos nucifera | 3 | COCNU_01G002030, COCNU_04G003940, COCNU_12G002630 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719773 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.2146.V1.1, AsparagusV1_Unassigned.77.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri4G31147 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT5G01720.1, AT5G27920.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10003812m.g.v1.0, Thhalv10012898m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g21020.v2.2, Sp6g40980.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g078910.2N, BniB05g066790.2N, BniB07g038770.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq06G1150, Ceq08G0943, Ceq08G1797 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl06G1200, Cgl08G0962, Cgl08G1858 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno03g01680, gene.Cymno18g01150 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g02460, gene.Thate02g08970 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8246 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.930, evm.TU.LG03.2495 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00006957, Pov_00007221 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G06640 |
| Poaceae | Echinochloa crus-galli | 11 | AH04.2116, AH04.44, AH05.3708, AH05.66, BH04.2199, BH04.53 ... |
| Poaceae | Eleusine coracana subsp. coracana | 8 | gene-QOZ80_5AG0378810, gene-QOZ80_5AG0393420 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0444540.1, HORVU.MOREX.r3.5HG0465190.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_001914, gene-QYE76_003718 |
| Poaceae | Oryza coarctata | 3 | Oco23G008100, Oco24G007700, Ocoptg000061lG000380 |
| Poaceae | Oryza sativa | 3 | LOC_Os11g01780.1, LOC_Os12g01760.1, LOC_Os12g36670.1 |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_05G007700, gene-BS78_05G231300 ... |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0204318, Pt_Chr0702857, Pt_Chr0703813, Pt_Chr0705238 |
| Poaceae | Sporobolus alterniflorus | 12 | Chr03G008220, Chr03G022770, Chr04G016790, Chr06G017460 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G180000, Tel5E01G261200 |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC2BG022870, gene_TRIDC4BG003160 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS5A02G091800.2, TraesCS5A02G150800.2 ... |
| Poaceae | Zea mays | 7 | Zm00001eb068870_P001, Zm00001eb094050_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-25830, nbis-gene-30302, nbis-gene-46015 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g19121, Zma_g24607, Zma_g25171, Zma_g25953 |
| Portulacaceae | Portulaca oleracea | 13 | evm.TU.LG01.1167, evm.TU.LG01.500, evm.TU.LG03.1134 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g09140, gene.Posoc07g11900 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_1_RagTag.1880, evm.TU.Scaffold_1_RagTag.94 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-4628, nbisL1-mrna-5643, nbisL1-mrna-8182 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-2107, nbisL1-mrna-5156 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-3650, nbisL1-mrna-5179, nbisL1-mrna-9623 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000009l.982, evm.TU.utg000012l.68 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00006080, Maker00011035, Maker00016912 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-2651, nbisL1-mrna-4914, nbisL1-mrna-7890 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-13814, nbisL1-mrna-16652, nbisL1-mrna-84 |
| Salicaceae | Populus euphratica | 6 | populus_peu11481, populus_peu13333, populus_peu15661 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132606760, gene-LOC132645993 |
| Solanaceae | Solanum chilense | 2 | SOLCI000857800, SOLCI004699000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007469, gene-LOC107032076 |
| Tamaricaceae | Reaumuria soongarica | 3 | gene_18136, gene_5713, gene_6639 |
| Tamaricaceae | Tamarix chinensis | 3 | TC02G0853, TC02G2398, TC07G1061 |
| Zosteraceae | Zostera marina | 1 | Zosma01g17700.v3.1 |