Basic Information
Locus ID:
Ag2G01058
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Major Facilitator Superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 57407649 | 57412921 | + | Ag2G01058 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.88 | 55,684.25 Da | 32.43 | 100.95 | 0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17380 | MFS_SLC17A9_like | 107 | 509 | 2.9668E-148 | IPR044777 |
| Pfam | PF07690 | Major Facilitator Superfamily | 115 | 473 | 3.3E-50 | IPR011701 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 101 | 508 | 1.31E-72 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 102 | 295 | 1.7E-39 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 315 | 513 | 5.1E-15 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 106 | 512 | 23.627916 | IPR020846 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G38060.1 | phosphate transporter 4;2. Encodes an inorganic phosphate transporter (PHT4;2). | 0 |
| RefSeq | XP_017249097.1 | PREDICTED: probable anion transporter 3, chloroplastic [Daucus carota subsp. sativus] | 0 |
| Q7XJR2 | Probable anion transporter 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ANTR3 PE=2 SV=2 | 0 | |
| TrEMBL | A0A164Z7W4 | MFS domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_018730 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 11.818411 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 16.309305 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 14.968812 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 14.211602 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 13.638084 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 19.256464 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 14.079152 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 7.28447 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 9.294375 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 10.422568 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 11.739267 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 23.017376 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 32.007244 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 28.709547 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 2.008005 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1.332842 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.368728 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 4.636748 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.724377 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 8.773561 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 6.877795 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 2.531825 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 3.811598 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 1.351104 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 1.397369 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 3.109641 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 1.495077 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.960173 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 1.83128 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.186378 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.293502 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.27975 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 1.164483 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.699985 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.048784 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.03234 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 2.832475 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.340752 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.202841 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 10.506565 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 1.880478 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.893042 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.480601 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 15.326346 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 3.389209 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 3.442659 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 1.897777 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 2.467615 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg14800, jg38007 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_1758, gene_1761, gene_6930 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah003491, Ah027915 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_5g102300, BVRB_7g172770 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg1644, Sbi_jg34911, Sbi_jg34912, Sbi_jg4667, Sbi_jg7405 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg12625, Seu_jg3104 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00001370, GOSA_00001371, GOSA_00003271 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl51761, Sgl57067, Sgl72855, Sgl76385 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000006958, gene:ENSEOMG00000021184 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5BG0009830, CQ.Regalona.r1.7AG0003770 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30061800, pistato.v30285440 |
| Apiaceae | Apium graveolens | 2 | Ag11G04146, Ag2G01058 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G000700, COCNU_12G008480 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103695499, gene-LOC103704065 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_Unassigned.761.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri10G10487, Ftri10G33493, Ftri9G09985 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G38060.1, AT3G46980.3 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10010272m.g.v1.0, Thhalv10017818m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g20380.v2.2, Sp5g14740.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g006770.2N, BniB08g059730.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq08G1052, Ceq08G1949 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1078 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g19990 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate06g00070, gene.Thate07g13460 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.1071, evm.TU.LG09.1149 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00002786, Pov_00016278 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb2G09987, Lb3G20440, Lb3G20445, Lb7G33409 |
| Poaceae | Echinochloa crus-galli | 7 | AH02.3896, AH05.2224, BH02.3920, BH05.2290, BH07.4225 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0040180, gene-QOZ80_1BG0090220 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0074210.1, HORVU.MOREX.r3.3HG0301710.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_014416, gene-QYE76_056427 |
| Poaceae | Oryza coarctata | 3 | Oco02G026020, Oco09G011110, Oco10G011070 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g63290.1, LOC_Os05g37820.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G339000, gene-BS78_09G163400 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0504815, Pt_Chr0601506, Pt_Ctg00399 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G004480, Chr05G028900, Chr18G010790, Chr22G006870 |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G454200, Tel3E01G584200, Tel7E01G126500 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC1AG041550, gene_TRIDC1BG047380 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS1A02G279300.1, TraesCS1B02G288300.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb147760_P001, Zm00001eb288710_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-11385, nbis-gene-14091 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g27093, Zma_g9011 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.2897, evm.TU.LG16.732, evm.TU.LG19.1012 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g40600, gene.Posoc02g00340 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_13_RagTag.900, evm.TU.Scaffold_13_RagTag.901 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-30114, nbisL1-mrna-5567 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-1414, nbisL1-mrna-15647 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16271, nbisL1-mrna-3734 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000015l.533, evm.TU.utg000016l.672 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00015370, Maker00016858 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4984 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-13725, nbisL1-mrna-20882 |
| Salicaceae | Populus euphratica | 3 | populus_peu02051, populus_peu25524, populus_peu25565 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132630688, gene-LOC132631109 |
| Solanaceae | Solanum chilense | 2 | SOLCI004498600, SOLCI006106300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107029541, gene-LOC107031772 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_3622, gene_7661 |
| Tamaricaceae | Tamarix chinensis | 2 | TC07G0323, TC11G1139 |
| Zosteraceae | Zostera marina | 1 | Zosma01g40920.v3.1 |