Basic Information
Locus ID:
Ag2G01036
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 54094797 | 54097931 | + | Ag2G01036 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.62 | 27,276.69 Da | 47.40 | 79.92 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03752 | proteasome_alpha_type_4 | 3 | 215 | 3.62842E-163 | - |
| Pfam | PF10584 | Proteasome subunit A N-terminal signature | 5 | 27 | 1.7E-13 | IPR000426 |
| Pfam | PF00227 | Proteasome subunit | 30 | 214 | 1.2E-62 | IPR001353 |
| SUPERFAMILY | SSF56235 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) | 4 | 236 | 1.28E-79 | IPR029055 |
| Gene3D | G3DSA:3.60.20.10 | Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 | 1 | 249 | 1.1E-93 | IPR029055 |
| SMART | SM00948 | Proteasome_A_N_2 | 5 | 27 | 3.4E-11 | IPR000426 |
| ProSiteProfiles | PS51475 | Proteasome alpha-type subunit profile. | 20 | 236 | 93.85508 | IPR023332 |
| ProSitePatterns | PS00388 | Proteasome alpha-type subunits signature. | 5 | 27 | - | IPR000426 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G22110.1 | 20S proteasome alpha subunit C1. Encodes the alpha-3 subunit of 20s proteasome. | 0 |
| RefSeq | XP_017249027.1 | PREDICTED: proteasome subunit alpha type-4-like [Daucus carota subsp. sativus] | 0 |
| O82530 | Proteasome subunit alpha type-4 OS=Petunia hybrida OX=4102 GN=PAC1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A164Z857 | Proteasome subunit alpha type OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_018740 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 70.168015 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 64.35836 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 60.00742 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 59.607758 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 60.356735 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 58.375526 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 48.631081 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 36.607147 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 173.404129 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 169.651505 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 185.124557 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 187.228271 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 183.000397 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 207.799164 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 141.697632 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 130.479172 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 133.831665 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 145.972336 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 142.513123 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 164.951874 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 162.526459 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 188.683716 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 199.668289 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 202.738754 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 182.181442 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 149.962662 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 157.506409 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 118.407661 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 150.369827 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 102.277809 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 67.07357 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 72.296989 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 128.718918 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 138.67746 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 109.057533 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 190.859222 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 144.627136 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 177.001068 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 112.74321 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 84.009315 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 95.969147 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 427.823517 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 244.625809 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 101.789764 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 100.444267 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 462.088989 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 149.982437 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 157.43045 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 155.636795 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 134.994614 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg20936, jg6509 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19878 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah001597 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_2g030070, BVRB_5g113140 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg21582, Sbi_jg22239, Sbi_jg30818, Sbi_jg58449 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg16166, Seu_jg28320 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008765 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl54980, Sgl60239, Sgl62710, Sgl67330 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000006351, gene:ENSEOMG00000020143 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1BG0020940, CQ.Regalona.r1.2AG0022750 ... |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30199180, pistato.v30249260, pistato.v30279580 |
| Apiaceae | Apium graveolens | 2 | Ag2G01036, Ag7G01116 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G018330, COCNU_11G000680 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103710835 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.697.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G32308, Ftri3G17589 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G22110.1, AT4G15165.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10021384m.g.v1.0, Thhalv10026071m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g19940.v2.2, Sp7g13390.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g040790.2N, BniB06g058480.2N, BniB07g049500.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0495 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0508 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g04940 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0088s00032.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate02g36670, gene.Thate02g36690, gene.Thate08g15680 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-10231 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.1592, evm.TU.LG01.2754 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00033349, Pov_00038674 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb5G29027, Lb5G29029 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.382, BH06.510, CH06.505 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_6AG0509910, gene-QOZ80_6AG0510790 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0656250.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_028286, gene-QYE76_028396 |
| Poaceae | Oryza coarctata | 3 | Oco11G003210, Oco11G003520, Oco12G003170 |
| Poaceae | Oryza sativa | 3 | LOC_Os06g07140.1, LOC_Os06g07878.1, LOC_Os06g07978.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G057000 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr11G022040, Chr14G002450, Chr21G001550 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G257400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG015330, gene_TRIDC7BG004650 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G130500.1.cds1, TraesCS7B02G030800.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb271660_P001, Zm00001eb375510_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-5087 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g29172, Zma_g31420 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG02.833, evm.TU.LG02.834, evm.TU.LG05.485 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g14930 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.1035 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-13461, nbisL1-mrna-16570 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5346 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4355 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000004l.102, add.evm.TU.utg000008l.325 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17579, nbisL1-mrna-18215 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-7676, nbisL1-mrna-9637 |
| Salicaceae | Populus euphratica | 2 | populus_peu10550, populus_peu26456 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132606818, gene-LOC132621645 |
| Solanaceae | Solanum chilense | 1 | SOLCI005623200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011444 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.21721_chr08_-, STRG.32416_chr09_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G1313 |
| Zosteraceae | Zostera marina | 1 | Zosma03g07140.v3.1 |