halophFGD

Basic Information

Locus ID: Ag2G01014

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Zinc finger, C3HC4 type (RING finger)

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2	52030911	52032480	+	Ag2G01014

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.30	20,577.95 Da	56.15	76.89	-0.60

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
MobiDBLite	mobidb-lite	consensus disorder prediction	1	42	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	17	31	-	-

Best hit

Source	Best Hit ID	Description
TAIR	AT5G04460.1	RING/U-box superfamily protein.
RefSeq	XP_017248924.1	PREDICTED: uncharacterized protein LOC108219879 isoform X2 [Daucus carota subsp. sativus]
TrEMBL	A0A164Z8H7	RING-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_018756 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	2.530276	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	1.39589	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.920649	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	1.60201	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	2.321454	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	1.415627	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	2.366627	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	1.886424	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	1.576904	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	2.928132	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	3.314025	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	1.927373	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	3.728005	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	2.122328	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	1.87724	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.381897	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	1.853889	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	1.02013	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	2.892229	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0.774744	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	1.911202	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.66221	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	1.978508	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	1.703669	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	1.690071	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	1.932114	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.886354	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	1.369283	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.240087		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	1.196618		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.349743		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.306116		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0.799096		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	1.006694		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.497215		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.259215		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	1.953119	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.909818	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	1.008836	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.661524	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.372608	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	2.947112	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	1.763892	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.959243	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	1.283371	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	4.867441	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	5.173542	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	5.0149	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg14517, jg16511, jg2805, jg34378, jg35947, jg37569
Aizoaceae	Mesembryanthemum crystallinum	2	gene_21208, gene_9663
Amaranthaceae	Atriplex hortensis	4	Ah007353, Ah007788, Ah011681, Ah031405
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg11971, Sbi_jg18110, Sbi_jg36458, Sbi_jg46904
Amaranthaceae	Salicornia europaea	2	Seu_jg21194, Seu_jg4471
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00009534, GOSA_00027648
Amaranthaceae	Suaeda glauca	6	Sgl20760, Sgl20764, Sgl21372, Sgl26148, Sgl80382, Sgl82842
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000008682, gene:ENSEOMG00000015230 ... gene:ENSEOMG00000028189, gene:ENSEOMG00000037409, gene:ENSEOMG00000041756, gene:ENSEOMG00000052277
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.4AG0015770, CQ.Regalona.r1.4BG0016260 ... CQ.Regalona.r1.9AG0009930, CQ.Regalona.r1.9BG0012480
Anacardiaceae	Pistacia vera	2	pistato.v30057560, pistato.v30170380
Apiaceae	Apium graveolens	4	Ag10G00643, Ag11G04564, Ag2G01013, Ag2G01014
Arecaceae	Cocos nucifera	4	COCNU_07G011290, COCNU_08G010470, COCNU_09G007960 ... COCNU_10G008380
Arecaceae	Phoenix dactylifera	3	gene-LOC103698680, gene-LOC103716994, gene-LOC103719555
Asparagaceae	Asparagus officinalis	3	AsparagusV1_07.2095.V1.1, AsparagusV1_07.2096.V1.1 ... AsparagusV1_10.1558.V1.1
Asteraceae	Flaveria trinervia	2	Ftri17G27602, Ftri8G33871
Brassicaceae	Arabidopsis thaliana	2	AT2G27950.1, AT5G04460.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10016236m.g.v1.0, Thhalv10020131m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp3g08780.v2.2, Sp4g10770.v2.2, Sp6g38290.v2.2
Brassicaceae	Brassica nigra	5	BniB01g054510.2N, BniB02g056050.2N, BniB02g056060.2N ... BniB06g016760.2N, BniB07g057630.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq02G0530, Ceq05G1634
Casuarinaceae	Casuarina glauca	2	Cgl02G0551, Cgl05G1628
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno02g09520, gene.Cymno10g02710, gene.Cymno14g01200
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate03g19940, gene.Thate08g01740, gene.Thate08g22490
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-481
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG02.1148, evm.TU.LG09.809
Plantaginaceae	Plantago ovata	3	Pov_00015907, Pov_00035050, Pov_00040254
Plumbaginaceae	Limonium bicolor	4	Lb1G05329, Lb3G19559, Lb3G19560, Lb3G20631
Poaceae	Echinochloa crus-galli	7	AH01.5020, AH07.3999, BH03.1292, BH07.3810, CH07.3868 ... Contig866.37, Contig866.38
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_2AG0151100, gene-QOZ80_2BG0206510 ... gene-QOZ80_3AG0230430, gene-QOZ80_3BG0297420, gene-QOZ80_6AG0525080, gene-QOZ80_6BG0478710
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.4HG0331660.1, HORVU.MOREX.r3.4HG0414400.1 ... HORVU.MOREX.r3.6HG0631660.1
Poaceae	Lolium multiflorum	5	gene-QYE76_006873, gene-QYE76_018201, gene-QYE76_026812 ... gene-QYE76_026864, gene-QYE76_071767
Poaceae	Oryza coarctata	6	Oco03G025790, Oco04G026280, Oco05G000420, Oco06G000410 ... Oco17G012320, Oco18G012240
Poaceae	Oryza sativa	3	LOC_Os02g57750.1, LOC_Os03g01720.1, LOC_Os09g39690.1
Poaceae	Paspalum vaginatum	3	gene-BS78_01G513200, gene-BS78_02G135100 ... gene-BS78_04G325100
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0100969, Pt_Chr0105824, Pt_Chr0604587, Pt_Chr0605649 ... Pt_Chr0700641
Poaceae	Sporobolus alterniflorus	8	Chr09G026680, Chr10G005430, Chr11G013770, Chr12G000330 ... Chr13G000440, Chr14G008280, Chr15G000360, Chr21G008450
Poaceae	Thinopyrum elongatum	2	Tel4E01G014000, Tel6E01G746700
Poaceae	Triticum dicoccoides	5	gene_TRIDC4AG047270, gene_TRIDC4BG001400 ... gene_TRIDC5AG075100, gene_TRIDC6AG059490, gene_TRIDC6BG070490
Poaceae	Triticum aestivum	8	TraesCS4A02G311200.1, TraesCS4B02G003100.1 ... TraesCS4D02G003000.2, TraesCS4D02G354300.1, TraesCS5A02G529500.1, TraesCS6A02G405400.1, TraesCS6B02G449800.2, TraesCS6D02G389100.1
Poaceae	Zea mays	3	Zm00001eb000600_P001, Zm00001eb190930_P002 ... Zm00001eb307770_P002
Poaceae	Zoysia japonica	3	nbis-gene-31799, nbis-gene-3200, nbis-gene-39764
Poaceae	Zoysia macrostachya	3	Zma_g17454, Zma_g2277, Zma_g32020
Portulacaceae	Portulaca oleracea	7	evm.TU.LG06.1040, evm.TU.LG07.1534, evm.TU.LG08.1488 ... evm.TU.LG11.481, evm.TU.LG15.1710, evm.TU.LG15.1711, evm.TU.LG22.380
Posidoniaceae	Posidonia oceanica	2	gene.Posoc02g13730, gene.Posoc06g05950
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_14_RagTag.833, evm.TU.Scaffold_4_RagTag.1566
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-16588, nbisL1-mrna-26175
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-19185, nbisL1-mrna-3183, nbisL1-mrna-5507
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-17157, nbisL1-mrna-21789, nbisL1-mrna-21790 ... nbisL1-mrna-4388
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000004l.315, evm.TU.utg000008l.852 ... evm.TU.utg000025l.50
Rhizophoraceae	Kandelia obovata	3	Maker00000271, Maker00004061, Maker00012369
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-15898, nbisL1-mrna-16309, nbisL1-mrna-2200
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-21424, nbisL1-mrna-23799, nbisL1-mrna-9601
Salicaceae	Populus euphratica	5	populus_peu06187, populus_peu08312, populus_peu20028 ... populus_peu20029, populus_peu35391
Solanaceae	Lycium barbarum	2	gene-LOC132600490, gene-LOC132612596
Solanaceae	Solanum chilense	3	SOLCI001834700, SOLCI001952400, SOLCI004828500
Solanaceae	Solanum pennellii	4	gene-LOC107004761, gene-LOC107004788, gene-LOC107012117 ... gene-LOC107022532
Tamaricaceae	Reaumuria soongarica	2	STRG.32408_chr09_+, gene_8592
Tamaricaceae	Tamarix chinensis	3	TC02G1057, TC03G1905, TC11G1621
Zosteraceae	Zostera marina	2	Zosma05g26370.v3.1, Zosma06g29220.v3.1