Basic Information
Locus ID:
Ag2G00917
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Haloacid dehalogenase-like hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 40578247 | 40584568 | - | Ag2G00917 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.74 | 41,522.97 Da | 36.34 | 88.37 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13344 | Haloacid dehalogenase-like hydrolase | 40 | 144 | 7.4E-22 | IPR006357 |
| Pfam | PF13242 | HAD-hyrolase-like | 269 | 363 | 1.6E-15 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 40 | 364 | 3.35E-28 | IPR036412 |
| Gene3D | G3DSA:3.40.50.1000 | - | 110 | 269 | 6.3E-99 | IPR023214 |
| Gene3D | G3DSA:3.40.50.1000 | - | 40 | 364 | 6.3E-99 | IPR023214 |
| TIGRFAM | TIGR01456 | CECR5: HAD hydrolase, TIGR01456 family | 38 | 368 | 3.0E-129 | IPR006353 |
| TIGRFAM | TIGR01460 | HAD-SF-IIA: HAD hydrolase, family IIA | 40 | 340 | 9.5E-66 | IPR006357 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G45740.1 | hydrolase family protein / HAD-superfamily protein. | 0 |
| RefSeq | XP_017250226.1 | PREDICTED: uncharacterized protein YKR070W [Daucus carota subsp. sativus] | 0 |
| Q91WM2 | Haloacid dehalogenase-like hydrolase domain-containing 5 OS=Mus musculus OX=10090 GN=Hdhd5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A164ZAM4 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_018857 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 11.188903 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 10.048051 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 6.159235 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 7.458009 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 8.158779 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 6.023085 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 4.063432 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 4.247346 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 17.676605 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 18.453102 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 20.904543 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 20.415634 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 18.657211 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 17.639347 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 15.336027 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 17.530813 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 16.045523 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 14.528657 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 13.071815 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 12.836281 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 14.808694 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 18.362623 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 14.544393 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 15.237665 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 15.550111 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 18.245426 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 17.907017 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 11.834846 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 17.026781 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.578613 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 5.40058 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 4.065824 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 5.2625 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 11.196888 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 6.218369 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.554588 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.81162 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.350503 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 10.24256 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 6.964497 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 6.115942 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 14.098205 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 10.430425 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 10.74753 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 6.569726 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 17.304565 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 10.181255 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 18.258654 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 21.716967 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 23.647688 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg14600, jg35827 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_12974, gene_12976, gene_7074 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah033518 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g175390 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg20770, Sbi_jg22986, Sbi_jg26859, Sbi_jg33714 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg16861, Seu_jg8402 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00003056, GOSA_00009298, GOSA_00009299 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl62030, Sgl66590, Sgl73116, Sgl76664 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000006836, gene:ENSEOMG00000021924 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0011550, CQ.Regalona.r1.9BG0004180 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30059410, pistato.v30171730 |
| Apiaceae | Apium graveolens | 1 | Ag2G00917 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G014620 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103711068 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_07.345.V1.1, AsparagusV1_08.1155.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G22712 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G45740.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10002577m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g15770.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g058570.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G0673, Ceq08G2383 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G0681, Cgl08G2577 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g00150 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0328s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g01720 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-2322, nbisL1-mrna-2323 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.1490, evm.TU.LG09.987 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00016054 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb0G36867 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.4028, BH01.4431, CH01.4661 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0243860, gene-QOZ80_3BG0284380 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0385920.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_068832 |
| Poaceae | Oryza coarctata | 1 | Oco05G010240 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g17590.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G393600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0405526, Pt_Chr0502312 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr04G008330, Chr07G003280 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G352300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG014330, gene_TRIDC4BG035750 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G105400.1, TraesCS4B02G198500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb397220_P001 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g3872 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG04.891, evm.TU.LG05.2046, evm.TU.LG19.1486 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g02800 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_12_RagTag.315, evm.TU.Scaffold_4_RagTag.1662 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-24482, nbisL1-mrna-26077 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10744, nbisL1-mrna-12658 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-19592, nbisL1-mrna-4474 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.920, evm.TU.utg000027l.383 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000219, Maker00018173 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2132, nbisL1-mrna-5601 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11817, nbisL1-mrna-9512 |
| Salicaceae | Populus euphratica | 2 | populus_peu06336, populus_peu20168 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132605289 |
| Solanaceae | Solanum chilense | 1 | SOLCI003047100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107023741 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3271 |
| Tamaricaceae | Tamarix chinensis | 2 | TC02G2242, TC11G0015 |
| Zosteraceae | Zostera marina | 1 | Zosma06g22720.v3.1 |