Basic Information
Locus ID:
Ag2G00899
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the SecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 39595322 | 39603967 | + | Ag2G00899 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.08 | 93,155.48 Da | 40.96 | 91.02 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16587 | RING-HC_TRIM32_C-VII | 11 | 57 | 5.66204E-18 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 586 | 622 | 0.26 | IPR001680 |
| Pfam | PF13445 | RING-type zinc-finger | 12 | 54 | 2.3E-6 | IPR027370 |
| Pfam | PF00400 | WD domain, G-beta repeat | 679 | 710 | 7.7E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 550 | 839 | 7.18E-42 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 344 | 469 | 3.47E-9 | IPR011009 |
| SUPERFAMILY | SSF57850 | RING/U-box | 8 | 64 | 2.56E-10 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 535 | 631 | 4.3E-14 | IPR015943 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 87 | 2.3E-15 | IPR013083 |
| Gene3D | G3DSA:2.130.10.10 | - | 632 | 840 | 9.7E-30 | IPR015943 |
| SMART | SM00320 | WD40_4 | 629 | 671 | 0.81 | IPR001680 |
| SMART | SM00320 | WD40_4 | 583 | 623 | 6.4E-4 | IPR001680 |
| SMART | SM00184 | ring_2 | 12 | 56 | 1.9E-6 | IPR001841 |
| SMART | SM00320 | WD40_4 | 543 | 580 | 0.98 | IPR001680 |
| SMART | SM00320 | WD40_4 | 674 | 711 | 3.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 714 | 755 | 3.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 802 | 838 | 270.0 | IPR001680 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 12 | 57 | 11.692616 | IPR001841 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 681 | 720 | 10.842632 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 681 | 710 | 8.861059 | - |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 31 | 40 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21651.1 | zinc ion binding. | 0 |
| RefSeq | XP_017252766.1 | PREDICTED: uncharacterized protein LOC108223161 isoform X1 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A164ZAT5 | Protein translocase subunit SecA OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_018875 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 10.300112 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 10.04663 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 10.783965 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 10.870934 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 10.559872 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 11.635051 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 11.681001 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 10.958656 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 13.568076 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 13.143281 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 15.362988 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 13.333467 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 15.245498 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 11.149884 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 5.231009 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 5.209856 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 4.84479 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 7.021646 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 5.231203 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 6.399957 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 10.506721 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 5.799216 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 6.025113 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 6.418493 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 7.350058 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 7.584721 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 7.34424 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 7.116141 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 6.980306 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.43614 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 3.041746 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.065646 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 9.013717 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 5.544885 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 9.322817 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 4.658274 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.411615 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.81341 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 5.858724 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 5.088503 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.13755 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 15.345292 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 11.355538 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 26.178053 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 21.486454 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 12.901166 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 16.750256 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 8.736485 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 9.669336 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 10.226887 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg23145 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1079 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah030176 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg12388, Sbi_jg45954, Sbi_jg45955 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20286 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012124 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl71605 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000005992, gene:ENSEOMG00000037515 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.7AG0017890 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30039090 |
| Apiaceae | Apium graveolens | 1 | Ag2G00899 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G020300 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103702608 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.2763.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G03820 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G21651.1 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g19180.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g036410.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1866 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2006 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g02840 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0101s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g13040 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.840 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00037850 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G25334 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.2399, BH05.2500, CH05.2595 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0372670, gene-QOZ80_5BG0420010 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0065120.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_013164 |
| Poaceae | Oryza coarctata | 2 | Oco09G010000, Oco10G010090 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g34880.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G149300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0505050 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G020140, Chr12G017830 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G434500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG039410, gene_TRIDC1BG044810 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G263800.2, TraesCS1B02G274400.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb120420_P001, Zm00001eb337940_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-13971 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g27173 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.1158, evm.TU.LG14.508 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc05g18750, gene.Posoc05g18840 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.609 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-9641 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2484 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-18165, nbisL1-mrna-18166 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.610 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003272 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2898 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20429 |
| Salicaceae | Populus euphratica | 2 | populus_peu19080, populus_peu19094 |
| Solanaceae | Solanum chilense | 1 | SOLCI001197300 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.9906_chr06_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G2001 |
| Zosteraceae | Zostera marina | 1 | Zosma05g11100.v3.1 |