halophFGD

Basic Information

Locus ID: Ag2G00801

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Inactive protein kinase SELMODRAFT_444075-like

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2	31329937	31431178	-	Ag2G00801

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.50	82,741.11 Da	43.75	87.77	-0.38

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00051	EFh	593	655	1.10792E-24	IPR002048
CDD	cd00051	EFh	666	728	1.24797E-26	IPR002048
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	312	511	6.3E-42	IPR001245
Pfam	PF13499	EF-hand domain pair	664	727	1.0E-17	IPR002048
Pfam	PF13499	EF-hand domain pair	593	654	3.2E-14	IPR002048
SUPERFAMILY	SSF47473	EF-hand	579	728	2.29E-56	IPR011992
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	291	519	1.03E-60	IPR011009
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	383	539	2.0E-40	-
Gene3D	G3DSA:1.10.238.10	-	656	704	1.1E-25	-
Gene3D	G3DSA:1.10.238.10	-	705	730	2.0E-6	-
Gene3D	G3DSA:1.10.238.10	-	579	655	2.2E-32	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	271	382	1.3E-24	-
SMART	SM00054	efh_1	666	694	3.1E-8	IPR002048
SMART	SM00219	tyrkin_6	307	544	3.4E-14	IPR020635
SMART	SM00054	efh_1	593	621	6.9E-8	IPR002048
SMART	SM00054	efh_1	629	657	2.5E-8	IPR002048
SMART	SM00054	efh_1	702	730	3.0E-9	IPR002048
ProSiteProfiles	PS50222	EF-hand calcium-binding domain profile.	625	660	14.5413	IPR002048
ProSiteProfiles	PS50222	EF-hand calcium-binding domain profile.	662	697	17.554005	IPR002048
ProSiteProfiles	PS50222	EF-hand calcium-binding domain profile.	589	624	16.66135	IPR002048
ProSiteProfiles	PS50222	EF-hand calcium-binding domain profile.	698	730	15.182896	IPR002048
ProSiteProfiles	PS50011	Protein kinase domain profile.	307	598	32.173943	IPR000719
ProSitePatterns	PS00018	EF-hand calcium-binding domain.	638	650	-	IPR018247
ProSitePatterns	PS00018	EF-hand calcium-binding domain.	711	723	-	IPR018247
ProSitePatterns	PS00018	EF-hand calcium-binding domain.	675	687	-	IPR018247
ProSitePatterns	PS00018	EF-hand calcium-binding domain.	602	614	-	IPR018247
ProSitePatterns	PS00109	Tyrosine protein kinases specific active-site signature.	424	436	-	IPR008266
MobiDBLite	mobidb-lite	consensus disorder prediction	60	75	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	50	75	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0004713 (protein tyrosine kinase activity) GO:0005509 (calcium ion binding) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G21274.1	calmodulin 6. Encodes a calmodulin isoform. Expressed in leaves.
RefSeq	XP_017249455.1	PREDICTED: proline-rich receptor-like protein kinase PERK15 [Daucus carota subsp. sativus]
Swiss-Prot	A2WN93	Calmodulin-1 OS=Oryza sativa subsp. indica OX=39946 GN=CAM1-1 PE=1 SV=2
TrEMBL	A0A164ZCR2	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_018970 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	66.19725	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	63.533504	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	60.192272	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	60.711098	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	59.591393	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	42.387047	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	33.444542	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	21.472132	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	105.017433	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	103.018089	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	107.913574	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	124.177391	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	113.870224	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	120.20787	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	369.253632	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	315.351196	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	386.955994	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	243.92009	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	198.954056	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	240.874832	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	198.817551	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	315.370392	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	351.27774	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	337.886719	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	294.652618	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	216.470474	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	266.124084	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	189.340698	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	257.972412	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	94.11898		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	91.141655		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	107.88266		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	220.876312		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	176.079575		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	164.842834		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	173.059402		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	147.867844		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	183.544785		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	114.028732	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	64.418533	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	42.074429	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	130.186935	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	104.554649	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	112.341591	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	102.840569	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	154.144867	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	155.792191	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	162.686935	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	136.696686	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	151.27951	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg1471
Anacardiaceae	Pistacia vera	1	pistato.v30168650
Apiaceae	Apium graveolens	4	Ag10G02206, Ag11G04546, Ag2G00801, Ag9G01854
Arecaceae	Cocos nucifera	1	scaffold000460G000040
Arecaceae	Phoenix dactylifera	1	gene-LOC103697818
Asparagaceae	Asparagus officinalis	1	AsparagusV1_Unassigned.288.V1.1
Asteraceae	Flaveria trinervia	3	Ftri15G18457, Ftri17G12801, Ftri6G19474
Casuarinaceae	Casuarina equisetifolia	1	Ceq05G0955
Casuarinaceae	Casuarina glauca	1	Cgl05G0954
Plantaginaceae	Plantago ovata	1	Pov_00000158
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_18_RagTag.210
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-28373, nbisL1-mrna-7221
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-13228
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-7688, nbisL1-mrna-7689, nbisL1-mrna-7690
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000023l.272
Rhizophoraceae	Kandelia obovata	1	Maker00018787
Salicaceae	Populus euphratica	2	populus_peu04171, populus_peu12000
Solanaceae	Lycium barbarum	1	gene-LOC132644359
Solanaceae	Solanum pennellii	1	gene-LOC107025325