Basic Information
Locus ID:
Ag2G00792
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 30842321 | 30848292 | - | Ag2G00792 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.77 | 34,877.49 Da | 37.58 | 86.37 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01648 | 4'-phosphopantetheinyl transferase superfamily | 116 | 226 | 1.6E-16 | IPR008278 |
| SUPERFAMILY | SSF56214 | 4'-phosphopantetheinyl transferase | 5 | 107 | 6.28E-19 | IPR037143 |
| SUPERFAMILY | SSF56214 | 4'-phosphopantetheinyl transferase | 116 | 233 | 1.06E-18 | IPR037143 |
| Gene3D | G3DSA:3.90.470.20 | - | 114 | 230 | 2.6E-63 | IPR037143 |
| Gene3D | G3DSA:3.90.470.20 | - | 7 | 236 | 2.6E-63 | IPR037143 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_017248833.1 | PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase-like isoform X2 [Daucus carota subsp. sativus] | 0 |
| B2RYJ4 | L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase OS=Rattus norvegicus OX=10116 GN=Aasdhppt PE=2 SV=1 | 0 | |
| TrEMBL | A0A164ZCY1 | ACPS domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_018980 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 1.029174 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.959224 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.96963 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 1.79993 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 1.568265 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.567888 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.055586 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.539566 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 1.468612 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 1.728062 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 2.119895 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 1.376766 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 1.978636 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 1.556502 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.256062 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.23829 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.329597 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.464196 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.321785 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.788034 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 1.318339 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 1.149345 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.869684 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.505596 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.693099 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0.895412 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 1.267257 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.345144 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.298018 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.353895 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.191877 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.483479 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.713983 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 1.332722 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.767164 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.315724 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.036341 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.979271 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.258077 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.739279 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.708318 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 1.183439 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.056721 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 1.733214 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.717139 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 1.111748 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 1.063217 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 1.108533 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.375309 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.931949 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg34399 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19562 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007220 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl25550, Sgl30703 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000008975, gene:ENSEOMG00000031084 |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.4AG0012670, CQ.Regalona.r1.4AG0012680 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30169580 |
| Apiaceae | Apium graveolens | 1 | Ag2G00792 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103705021 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.1981.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri6G11136 |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq05G0591, Ceq05G0594 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0614 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g12160 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0099s00008.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g09440 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1314 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G05602 |
| Poaceae | Echinochloa crus-galli | 10 | AH04.203, AH05.119, AH05.120, BH04.194, BH04.196, BH05.137 ... |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_5BG0427490 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0356720.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_065207 |
| Poaceae | Oryza coarctata | 2 | Oco22G001310, Oco24G000680 |
| Poaceae | Oryza sativa | 2 | LOC_Os11g04160.1, LOC_Os12g03960.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G033300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0103714, Pt_Chr0103731 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr07G021740 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G202900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG030010, gene_TRIDC4BG020550 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G187800.1, TraesCS4B02G130400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb196200_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-40126, nbis-gene-52931, nbis-gene-54808 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g17533, Zma_g25469, Zma_g25470 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g28240 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1254 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-3903 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17301 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.473 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005305 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12378 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5482 |
| Salicaceae | Populus euphratica | 1 | populus_peu19960 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132615126 |
| Solanaceae | Solanum chilense | 1 | SOLCI007391600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107004462 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13322 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G1688 |
| Zosteraceae | Zostera marina | 1 | Zosma03g17480.v3.1 |