halophFGD

Basic Information

Locus ID: Ag2G00789

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Nuclear pore complex protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2	30764755	30773425	-	Ag2G00789

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.30	128,997.10 Da	59.75	57.02	-0.57

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
MobiDBLite	mobidb-lite	consensus disorder prediction	660	688	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	488	507	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	45	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1190	1217	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	674	688	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	490	507	-	-
Coils	Coil	Coil	121	141	-	-

KEGG Pathway

KO Term:

K14317 (nuclear pore complex protein Nup214)

Pathway:

ko03013 (Nucleocytoplasmic transport) map03013 (Nucleocytoplasmic transport)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G10650.1
RefSeq	XP_017252400.1	PREDICTED: nuclear pore complex protein NUP1 [Daucus carota subsp. sativus]
Swiss-Prot	Q9CAF4	Nuclear pore complex protein NUP1 OS=Arabidopsis thaliana OX=3702 GN=NUP1 PE=1 SV=1
TrEMBL	A0A164ZD22	Nuclear pore complex protein NUP1-like OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_018987 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	25.818964	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	20.510357	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	19.413261	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	19.57016	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	21.209028	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	28.995993	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	23.712162	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	28.578638	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	41.973686	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	43.40057	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	44.176655	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	51.06361	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	40.994301	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	35.201321	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	9.059233	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	11.152552	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	13.29362	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	14.798636	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	11.393175	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	15.783639	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	14.992167	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	16.4195	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	19.570141	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	17.089867	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	16.355671	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	17.356703	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	14.288502	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	13.122005	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	17.559746	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	6.246278		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	10.281758		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	7.275567		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	24.751333		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	19.311846		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	25.998934		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	13.718539		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	7.424407		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	7.684993		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	27.046631	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	15.583206	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	8.888904	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	23.955658	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	19.914017	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	34.628815	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	27.556925	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	19.979742	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	23.550138	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	21.208496	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	22.243952	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	19.426653	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg14383, jg2849
Aizoaceae	Mesembryanthemum crystallinum	1	gene_9551
Amaranthaceae	Atriplex hortensis	1	Ah016086
Amaranthaceae	Beta vulgaris	1	BVRB_8g189180
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg40848, Sbi_jg50808
Amaranthaceae	Salicornia europaea	1	Seu_jg2357
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00020527
Amaranthaceae	Suaeda glauca	2	Sgl43911, Sgl48677
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000009719, gene:ENSEOMG00000032791 ... gene:ENSEOMG00000044010, gene:ENSEOMG00000044149
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.8AG0010350, CQ.Regalona.r1.8BG0012910
Anacardiaceae	Pistacia vera	1	pistato.v30169200
Apiaceae	Apium graveolens	1	Ag2G00789
Arecaceae	Cocos nucifera	3	COCNU_03G000180, scaffold000958G000010 ... scaffold000958G000020
Arecaceae	Phoenix dactylifera	3	gene-LOC103707572, gene-LOC103721995, gene-LOC103724243
Asparagaceae	Asparagus officinalis	4	AsparagusV1_03.419.V1.1, AsparagusV1_03.420.V1.1 ... AsparagusV1_05.1653.V1.1, AsparagusV1_07.3401.V1.1
Asteraceae	Flaveria trinervia	5	Ftri6G14067, Ftri8G09474, Ftri8G21862, Ftri8G31849 ... Ftri9G27396
Brassicaceae	Arabidopsis thaliana	1	AT3G10650.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10019905m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp3g08960.v2.2
Brassicaceae	Brassica nigra	1	BniB07g024890.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq08G1619
Casuarinaceae	Casuarina glauca	1	Cgl08G1658
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno06g14100, gene.Cymno17g01940
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g29390, gene.Thate02g39660
Nitrariaceae	Nitraria sibirica	2	evm.TU.Contig6.14, evm.TU.Contig6.15
Plantaginaceae	Plantago ovata	1	Pov_00040135
Plumbaginaceae	Limonium bicolor	4	Lb0G37982, Lb3G18468, Lb3G18469, Lb3G18470
Poaceae	Echinochloa crus-galli	3	AH01.146, BH03.3889, CH01.459
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_3AG0213260, gene-QOZ80_3BG0258400
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.5HG0517130.1
Poaceae	Lolium multiflorum	1	gene-QYE76_061394
Poaceae	Oryza coarctata	2	Oco05G025580, Oco06G026430
Poaceae	Oryza sativa	2	LOC_Os03g57425.1, LOC_Os03g57430.1
Poaceae	Paspalum vaginatum	1	gene-BS78_01G056200
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0105299, Pt_Chr0105315
Poaceae	Sporobolus alterniflorus	4	Chr01G003240, Chr04G022950, Chr04G030170, Chr12G035140
Poaceae	Thinopyrum elongatum	1	Tel5E01G668000
Poaceae	Triticum dicoccoides	3	gene_TRIDC5AG061690, gene_TRIDC5BG065730 ... gene_TRIDC5BG065740
Poaceae	Triticum aestivum	3	TraesCS5A02G426400.1, TraesCS5B02G428300.1 ... TraesCS5D02G434400.1
Poaceae	Zea mays	1	Zm00001eb060090_P001
Poaceae	Zoysia japonica	2	nbis-gene-15293, nbis-gene-16421
Poaceae	Zoysia macrostachya	2	Zma_g2611, Zma_g330
Portulacaceae	Portulaca oleracea	2	evm.TU.LG04.2577, evm.TU.LG08.45
Posidoniaceae	Posidonia oceanica	2	gene.Posoc03g00210, gene.Posoc07g09020
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_1_RagTag.1079, evm.TU.Scaffold_2_RagTag.1225
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-3882, nbisL1-mrna-6529
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-12585, nbisL1-mrna-17287, nbisL1-mrna-17288
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-18773, nbisL1-mrna-21129
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000009l.486, evm.TU.utg000016l.864
Rhizophoraceae	Kandelia obovata	2	Maker00005684, Maker00017240
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-11048, nbisL1-mrna-12389
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-13286, nbisL1-mrna-13287, nbisL1-mrna-5499
Salicaceae	Populus euphratica	4	populus_peu06042, populus_peu06046, populus_peu19904 ... populus_peu23118
Solanaceae	Lycium barbarum	2	gene-LOC132615523, gene-LOC132640123
Solanaceae	Solanum chilense	3	SOLCI001503300, SOLCI002249400, SOLCI002249600
Solanaceae	Solanum pennellii	2	gene-LOC107004611, gene-LOC107020489
Tamaricaceae	Reaumuria soongarica	1	STRG.17173_chr08_-
Tamaricaceae	Tamarix chinensis	1	TC05G0967
Zosteraceae	Zostera marina	2	Zosma05g33260.v3.1, Zosma06g30540.v3.1