Basic Information
Locus ID:
Ag2G00705
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Ubiquitin-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 24877574 | 24880793 | + | Ag2G00705 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.84 | 8,598.80 Da | 23.92 | 98.77 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01791 | Ubl_UBL5 | 1 | 71 | 2.81841E-47 | - |
| Pfam | PF00240 | Ubiquitin family | 11 | 70 | 1.3E-6 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 73 | 5.76E-24 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 73 | 1.5E-29 | - |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 2 | 73 | 10.092108 | IPR000626 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42300.1 | ubiquitin-like protein 5. | 0 |
| RefSeq | XP_017249268.1 | PREDICTED: ubiquitin-like protein 5 [Daucus carota subsp. sativus] | 0 |
| Q9FGZ9 | Ubiquitin-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=UBL5 PE=3 SV=1 | 0 | |
| TrEMBL | A0A164ZFL5 | Ubiquitin-like domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_019101 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 316.684418 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 379.093903 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 476.725006 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 503.638702 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 443.621582 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 331.443726 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 358.342529 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 298.412415 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 280.820984 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 278.178436 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 283.273834 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 280.610687 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 289.133118 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 327.344482 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 799.250671 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 600.474731 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 749.094788 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 498.016876 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 461.436798 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 583.421753 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 644.09613 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 842.962097 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 795.342285 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 781.271667 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 745.498901 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 538.428894 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 612.7052 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 618.6651 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 589.033325 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 397.639008 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 286.877563 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 315.57309 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 331.756256 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 456.959473 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 296.433563 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 631.280457 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 514.4375 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 583.93219 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 198.09079 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 234.822052 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 329.495544 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 782.533813 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 1100.66333 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 804.882812 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 1000.017212 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 802.929016 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 1238.856323 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 448.762085 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 462.129944 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 435.395355 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg8254 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_25680, gene_4258 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah009096, Ah037843 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_6g133450, BVRB_9g207790 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg31322, Sbi_jg50847 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24247 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020118 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl10400, Sgl15679, Sgl78518 |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.2BG0000680, CQ.Regalona.r1.9AG0004580 ... |
| Apiaceae | Apium graveolens | 2 | Ag10G00600, Ag2G00705 |
| Arecaceae | Cocos nucifera | 3 | COCNU_07G000130, COCNU_10G000310, COCNU_10G000320 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103703961, gene-LOC103708417 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.31.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri17G09764, Ftri6G21264, FtriNA05225 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G45180.1, AT5G42300.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10002757m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g08300.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g060540.2N, BniB07g049300.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1702 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1740 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno09g08430, gene.Cymno11g02170 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0225s00020.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g22660 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00014616, Pov_00015993 |
| Poaceae | Echinochloa crus-galli | 8 | AH04.257, BH04.246, BH05.195, BH07.2504, CH04.265, CH05.250 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_2AG0138080, gene-QOZ80_2BG0193760 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0355880.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_023811, gene-QYE76_065301 |
| Poaceae | Oryza coarctata | 5 | Oco03G015900, Oco04G016520, Oco21G000870, Oco22G001710 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os02g41820.1, LOC_Os11g04880.1, LOC_Os12g04924.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G043600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0703104, Pt_Chr0703142 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr16G009220, Chr17G008230 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4AG029660, gene_TRIDC4BG020740 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS4A02G185200.1.cds1, TraesCS4B02G133400.1.cds1 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-25688, nbis-gene-27035 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g18401, Zma_g24713 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.393, evm.TU.LG21.95 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g18820, gene.Posoc04g03800 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-26124, nbisL1-mrna-5261, nbisL1-mrna-5357 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4738 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-4435, nbisL1-mrna-9988 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000008l.349 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9554 |
| Salicaceae | Populus euphratica | 4 | populus_peu06270, populus_peu08366, populus_peu20104 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132644749 |
| Solanaceae | Solanum chilense | 1 | SOLCI002047400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107032293 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_18095, gene_9138 |
| Zosteraceae | Zostera marina | 2 | Zosma03g01680.v3.1, Zosma06g20630.v3.1 |