Basic Information
Locus ID:
Ag2G00698
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Serine threonine-protein kinase-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 24629171 | 24631417 | + | Ag2G00698 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.51 | 80,645.37 Da | 34.23 | 90.73 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 496 | 640 | 1.7E-31 | IPR001245 |
| SUPERFAMILY | SSF50985 | RCC1/BLIP-II | 21 | 260 | 6.1E-16 | IPR009091 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 474 | 738 | 1.35E-61 | IPR011009 |
| Gene3D | G3DSA:2.130.10.30 | - | 62 | 305 | 1.0E-25 | IPR009091 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 646 | 744 | 5.5E-14 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 462 | 569 | 6.0E-29 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 570 | 645 | 1.4E-21 | - |
| SMART | SM00220 | serkin_6 | 492 | 742 | 9.5E-19 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 492 | 742 | 28.880722 | IPR000719 |
| ProSiteProfiles | PS50050 | TNFR/NGFR family cysteine-rich region domain profile. | 321 | 376 | 8.6744 | IPR001368 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 613 | 625 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 498 | 520 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39180.1 | CRINKLY4 related 2. | 0 |
| RefSeq | XP_017251116.1 | PREDICTED: serine/threonine-protein kinase-like protein CCR2, partial [Daucus carota subsp. sativus] | 0 |
| O80963 | Serine/threonine-protein kinase-like protein CCR2 OS=Arabidopsis thaliana OX=3702 GN=CCR2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A164ZFS2 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_019108 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.132071 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.042228 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.05174 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.094757 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.039647 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.163298 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.182027 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.031201 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.033274 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.029684 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.129537 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.128831 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg14951 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14248 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah030362 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg2059, Sbi_jg34457 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2712 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005787 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl71216, Sgl74786 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000034139, gene:ENSEOMG00000042270 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0016560, CQ.Regalona.r1.7BG0018310 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30272450 |
| Apiaceae | Apium graveolens | 2 | Ag10G01950, Ag2G00698 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G02069 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G39180.1, AT3G09780.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10016278m.g.v1.0, Thhalv10020117m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g08120.v2.2, Sp4g21510.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g055110.2N, BniB08g025170.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G0626, Ceq08G1317 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G0639, Cgl08G1343 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1956 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1421 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005113 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G00821 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1690, evm.TU.LG10.1180 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1564 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-5269, nbisL1-mrna-5365 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-21026 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3899 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000016l.232 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017075 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17137, nbisL1-mrna-19849 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20663, nbisL1-mrna-332 |
| Salicaceae | Populus euphratica | 3 | populus_peu20118, populus_peu25746, populus_peu25759 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132630062 |
| Solanaceae | Solanum chilense | 1 | SOLCI004669900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031805 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_7566 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G0698 |