Basic Information
Locus ID:
Ag2G00659
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Macrophage erythroblast
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 20919402 | 20925548 | + | Ag2G00659 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.56 | 46,929.14 Da | 51.84 | 83.43 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16659 | RING-Ubox_Emp | 352 | 400 | 3.25864E-26 | - |
| Pfam | PF10607 | CTLH/CRA C-terminal to LisH motif domain | 179 | 318 | 5.3E-38 | IPR024964 |
| SUPERFAMILY | SSF57850 | RING/U-box | 348 | 409 | 3.27E-6 | - |
| SMART | SM00668 | ctlh | 178 | 235 | 1.2E-13 | IPR006595 |
| SMART | SM00757 | toby_final6 | 231 | 325 | 1.7E-21 | IPR013144 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 178 | 235 | 13.35816 | IPR006595 |
| ProSiteProfiles | PS51867 | Gid-type RING finger profile. | 326 | 399 | 14.863957 | IPR044063 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 140 | 172 | 8.849957 | IPR006594 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 35 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G55070.1 | LisH/CRA/RING-U-box domains-containing protein. | 0 |
| RefSeq | XP_017248910.1 | PREDICTED: macrophage erythroblast attacher-like [Daucus carota subsp. sativus] | 0 |
| Q9M2V9 | Protein MAEA homolog OS=Arabidopsis thaliana OX=3702 GN=MAEA PE=1 SV=1 | 0 | |
| TrEMBL | A0A162A419 | Macrophage erythroblast attacher OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_019154 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 30.286366 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 24.302822 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 24.312891 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 25.921553 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 23.620441 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 26.244053 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 22.977081 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 22.895256 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 42.301224 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 43.409225 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 44.801727 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 45.950924 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 43.406094 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 35.098656 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 45.955017 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 49.356831 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 56.819057 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 54.951931 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 53.698147 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 56.364986 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 57.405308 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 52.230717 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 60.565781 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 56.118843 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 55.716953 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 54.9007 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 57.652515 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 55.254852 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 52.449478 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 23.578527 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 23.853268 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 21.361197 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 38.940102 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 30.448874 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 37.13763 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 30.781013 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 26.613966 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 28.459818 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 28.871351 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 23.86343 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 17.972775 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 57.720592 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 75.116257 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 80.064056 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 117.772934 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 61.346775 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 90.916382 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 56.909893 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 46.598976 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 46.25597 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg9904 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7917 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah033474 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g036720 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg20805, Sbi_jg22958 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16830 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009321 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl62008, Sgl66568 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018932, gene:ENSEOMG00000019647 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2BG0012510, CQ.Regalona.r1.7AG0012640 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30171880 |
| Apiaceae | Apium graveolens | 1 | Ag2G00659 |
| Arecaceae | Cocos nucifera | 2 | COCNU_12G004220, scaffold006606G000030 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103703852, gene-LOC103709901, gene-LOC103723006 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.298.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | FtriNA28077 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G55070.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010415m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g07350.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB03g007290.2N, BniB05g056760.2N, BniB06g056910.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0688 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0696 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g09230 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0632s00009.v1.0, Dusal.0632s00011.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate03g09080, gene.Thate03g26410 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-7346 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG02.1511, evm.TU.LG05.270, evm.TU.LG05.272 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00040092 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G12395, Lb2G12423 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.1073, BH05.1119, CH05.1267 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0403820, gene-QOZ80_5BG0452220 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0024900.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_009872 |
| Poaceae | Oryza coarctata | 2 | Oco09G002890, Oco10G002940 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g06760.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G060700 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0501803 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G011880, Chr12G024770, Chr18G000540, Chr22G014690 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G197200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG015540, gene_TRIDC1BG019260 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G105500.1, TraesCS1B02G131000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb282460_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-18132 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g27745 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.908, evm.TU.LG05.2030 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g16550, gene.Posoc03g28980 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.406 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-26068, nbisL1-mrna-26069 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10750, nbisL1-mrna-18914 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-14175, nbisL1-mrna-4481 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000005l.110, evm.TU.utg000008l.928 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00001392, Maker00010297 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2125, nbisL1-mrna-498 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-19529, nbisL1-mrna-9505 |
| Salicaceae | Populus euphratica | 1 | populus_peu06354 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132615745 |
| Solanaceae | Solanum chilense | 1 | SOLCI006205200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018185 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_4877 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G3514 |
| Zosteraceae | Zostera marina | 1 | Zosma03g17810.v3.1 |