Basic Information
Locus ID:
Ag2G00588
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 17164698 | 17177800 | + | Ag2G00588 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.22 | 111,566.41 Da | 42.49 | 85.75 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13621 | Cupin-like domain | 148 | 369 | 2.4E-20 | IPR041667 |
| Pfam | PF12937 | F-box-like | 23 | 66 | 1.7E-6 | IPR001810 |
| Pfam | PF01636 | Phosphotransferase enzyme family | 668 | 900 | 2.6E-5 | IPR002575 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 671 | 906 | 2.38E-11 | IPR011009 |
| SUPERFAMILY | SSF81383 | F-box domain | 13 | 80 | 1.44E-12 | IPR036047 |
| SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 130 | 376 | 5.63E-51 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 5 | 94 | 3.1E-9 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 119 | 368 | 4.4E-72 | - |
| SMART | SM00558 | cupin_9 | 211 | 378 | 6.6E-17 | IPR003347 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 18 | 64 | 9.868391 | IPR001810 |
| ProSiteProfiles | PS51184 | JmjC domain profile. | 220 | 383 | 32.895409 | IPR003347 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G78280.1 | transferases, transferring glycosyl groups. | 0 |
| RefSeq | XP_017252667.1 | PREDICTED: F-box protein At1g78280 [Daucus carota subsp. sativus] | 0 |
| Q9M9E8 | Lysine-specific demethylase JMJ21 OS=Arabidopsis thaliana OX=3702 GN=JMJ21 PE=2 SV=3 | 0 | |
| TrEMBL | A0A164ZIF4 | F-box protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_019216 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 34.392464 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 29.525116 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 29.31881 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 33.25618 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 31.932825 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 29.720675 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 25.674387 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 27.511683 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 27.9051 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 22.665361 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 18.341228 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 17.490828 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 17.909622 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 16.255655 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 11.921474 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 13.972198 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 11.663961 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 12.975078 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 10.228483 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 22.460108 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 20.295607 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 22.787493 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 20.001377 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 26.736273 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 26.515635 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 17.779905 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 8.737147 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 14.955748 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 11.357993 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.380574 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.160943 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.157554 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 8.763442 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 21.962759 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 10.390795 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.499354 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 4.798537 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.488954 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 6.353943 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 7.39507 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 7.83332 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 15.119075 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 18.573244 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 10.004165 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 14.452747 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 9.736757 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 15.975513 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 22.239824 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 33.836182 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 36.283875 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg6131 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23336 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023831 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g008660 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg29356, Sbi_jg3584 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6371 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000840 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl11810, Sgl11971, Sgl17300 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015277, gene:ENSEOMG00000032924 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0011510, CQ.Regalona.r1.1BG0014450 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30041220 |
| Apiaceae | Apium graveolens | 1 | Ag2G00588 |
| Arecaceae | Cocos nucifera | 1 | scaffold001962G000090 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103717962 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1856.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G29468 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G78280.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018079m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g33400.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g057650.2N, BniB05g074310.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1317 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1419 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g07680 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g12260 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8770 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.1083 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00037228 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G00791, Lb1G06010 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.3424, BH01.3778, CH01.4028 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0250760, gene-QOZ80_3BG0277440 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0178050.1, HORVU.MOREX.r3.5HG0469230.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_067519 |
| Poaceae | Oryza coarctata | 2 | Oco05G015040, Oco06G015470 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g27250.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G332600 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr01G025070 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G609400, Tel5E01G282400 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG050810, gene_TRIDC2BG054010 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G351300.1, TraesCS2B02G369400.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb018970_P001 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g1085 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1814, evm.TU.LG06.556 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g16100 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.978 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-18986 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-18029 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6808 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.744 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010653 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8226 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9968 |
| Salicaceae | Populus euphratica | 3 | populus_peu32241, populus_peu32242, populus_peu32243 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627552 |
| Solanaceae | Solanum chilense | 1 | SOLCI003723700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017080 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1281 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1607 |
| Zosteraceae | Zostera marina | 1 | Zosma06g04340.v3.1 |