Basic Information
Locus ID:
Ag2G00565
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 15893347 | 15895076 | - | Ag2G00565 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.13 | 61,422.81 Da | 61.46 | 88.28 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03000 | NPH3 family | 98 | 346 | 3.5E-58 | IPR027356 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 98 | 370 | 63.14716 | IPR027356 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 395 | 416 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 395 | 435 | - | - |
| Coils | Coil | Coil | 438 | 458 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G48130.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_017228205.1 | PREDICTED: BTB/POZ domain-containing protein At5g48130-like [Daucus carota subsp. sativus] | 0 |
| Q9LUB9 | BTB/POZ domain-containing protein At5g48130 OS=Arabidopsis thaliana OX=3702 GN=At5g48130 PE=2 SV=1 | 0 | |
| TrEMBL | A0A164ZIV0 | NPH3 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_000325 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.077189 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.142523 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.052425 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.042336 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.30849 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.147777 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.047754 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.109425 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.04049 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.05155 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.064295 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.208834 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.132211 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.244848 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg37427 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_20670 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah015443 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25331, Sbi_jg9180 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19408 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011170 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl42926, Sgl47718 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000010240, gene:ENSEOMG00000034795 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8AG0014080 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30017380 |
| Apiaceae | Apium graveolens | 1 | Ag2G00565 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G004030 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103713374 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.2701.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G18325 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G48130.1 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2291 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2382 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g06200 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9813 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.2215 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00031835 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G14654 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.3516, BH03.3731, CH03.3947 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0574760, gene-QOZ80_7BG0606150 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0130630.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_040042 |
| Poaceae | Oryza coarctata | 2 | Oco13G011170, Oco14G011920 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g39530.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G330800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0304655 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr19G003350, Chr24G011260, Chr27G013870, Chr28G010450 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G361800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG024370, gene_TRIDC2BG028760 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G190500.2, TraesCS2B02G216500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb325790_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-32781, nbis-gene-561 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g5446, Zma_g6730 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG16.1143, evm.TU.LG20.1411 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g10170 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.1433 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-20575, nbisL1-mrna-20589 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14374 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21428 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.895 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13888 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4644 |
| Salicaceae | Populus euphratica | 1 | populus_peu26926 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132642346 |
| Solanaceae | Solanum chilense | 1 | SOLCI001406400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107024647 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_2204 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G0192 |