halophFGD

Basic Information

Locus ID: Ag2G00504

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description:

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2	12772305	12772631	+	Ag2G00504

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.40	12,447.14 Da	28.60	87.50	-0.19

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_017251958.1	PREDICTED: putative F-box/kelch-repeat protein At1g12870 [Daucus carota subsp. sativus]	0
TrEMBL	A0A161ZYW8	F-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_016817 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.232701	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.360225	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.09563	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.230009	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0.976598	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0.578599	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0.705504	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0.24692	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0.581766	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0.136503	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.572987	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.444918	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.769147	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	1.267959	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.800289	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	1.18622	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	1.550188	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	3.052485	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	4.336565	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	4.653324	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.780946	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.623415	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.325866	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.662683	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.886025	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.433943		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.344091		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.028429		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.300295		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0.58707		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	1.603386		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	1.355505		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	4.02201		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	1.849931		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.477724	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	1.420955	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.123132	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	1.616805	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.180941	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.433463	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.632983	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.199946	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.28628	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	1.131687	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0.169648	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Apiaceae	Apium graveolens	10	Ag2G00504, Ag2G01353, Ag5G02626, Ag5G02641, Ag6G00433 ... Ag7G01472, Ag9G01465, AgUnG00605, AgUnG01234, AgUnG01425
Asparagaceae	Asparagus officinalis	1	AsparagusV1_02.88.V1.1
Asteraceae	Flaveria trinervia	9	Ftri17G03779, Ftri17G11594, Ftri17G14448, Ftri17G18365 ... Ftri17G21512, Ftri17G26292, Ftri17G26949, Ftri17G27622, Ftri7G18648
Casuarinaceae	Casuarina glauca	1	Cgl05G1649