halophFGD

Basic Information

Locus ID: Ag2G00498

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Rho GTPase-activating protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2	12464730	12477680	-	Ag2G00498

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.17	86,598.64 Da	55.60	61.11	-0.94

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00821	PH	67	166	2.0705E-11	-
Pfam	PF14389	Leucine-zipper of ternary complex factor MIP1	514	581	3.2E-10	IPR025757
Pfam	PF00620	RhoGAP domain	239	301	1.6E-10	IPR000198
Pfam	PF00169	PH domain	66	170	1.8E-12	IPR001849
SUPERFAMILY	SSF50729	PH domain-like	54	182	5.63E-17	-
SUPERFAMILY	SSF48350	GTPase activation domain, GAP	242	350	6.47E-13	IPR008936
Gene3D	G3DSA:2.30.29.30	-	54	172	2.1E-16	IPR011993
Gene3D	G3DSA:1.10.555.10	Rho GTPase activation protein	214	356	8.6E-16	IPR008936
SMART	SM00233	PH_update	65	173	5.7E-16	IPR001849
ProSiteProfiles	PS50003	PH domain profile.	64	171	15.2083	IPR001849
ProSiteProfiles	PS50238	Rho GTPase-activating proteins domain profile.	119	348	11.072308	IPR000198
MobiDBLite	mobidb-lite	consensus disorder prediction	363	391	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	649	723	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	414	444	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	392	409	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	756	786	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	724	749	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	601	648	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	551	795	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	355	469	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	23	47	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	551	568	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	61	-	-
Coils	Coil	Coil	152	172	-	-
Coils	Coil	Coil	479	531	-	-

Gene Ontology

Biological Process:

GO:0007165 (signal transduction)

KEGG Pathway

KO Term:

K20642 (Rho GTPase-activating protein 22/24/25)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G24580.1	Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a Rho GTPase-activating protein that interacts with ROP1 (a Rho GTPase) and regulates pollen tube development. This protein can be observed at the apical tip of growing pollen tubes and on endocytic vesicles traveling to this region of the pollen tube.
RefSeq	XP_017254162.1	PREDICTED: rho GTPase-activating protein REN1 isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	F4JQZ3	Rho GTPase-activating protein REN1 OS=Arabidopsis thaliana OX=3702 GN=REN1 PE=1 SV=2
TrEMBL	A0A164ZKZ7	Rho GTPase-activating protein REN1-like OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_019308 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.221845	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.034918	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0.117214	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0.546844	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0.614359	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	2.973246	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0.50993	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0.732494	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.166697	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.166234	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.087208	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0.190493	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.248765	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0.61277	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0.987182	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.234668	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.086602	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.117269	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.10343	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.130858	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.49012	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.023728		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.062485		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	8.630091		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.047426		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.106048	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.085148	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.115336	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.225817	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.103523	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.038459	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.516281	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	8.357888	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	21.9622	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	16.662621	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg10792, jg16216, jg16353, jg35607, jg6142, jg8522
Aizoaceae	Mesembryanthemum crystallinum	2	gene_11774, gene_23365
Amaranthaceae	Atriplex hortensis	3	Ah005078, Ah012278, Ah023719
Amaranthaceae	Beta vulgaris	2	BVRB_1g007850, BVRB_4g073750
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg17790, Sbi_jg4168, Sbi_jg49634, Sbi_jg62450
Amaranthaceae	Salicornia europaea	2	Seu_jg1024, Seu_jg5615
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00001020, GOSA_00007213
Amaranthaceae	Suaeda glauca	2	Sgl10570, Sgl61679
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000010800, gene:ENSEOMG00000013959 ... gene:ENSEOMG00000026994, gene:ENSEOMG00000040372
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.1AG0010740, CQ.Regalona.r1.1BG0015060 ... CQ.Regalona.r1.4AG0002250, CQ.Regalona.r1.4BG0002330
Anacardiaceae	Pistacia vera	2	pistato.v30041760, pistato.v30050660
Apiaceae	Apium graveolens	3	Ag1G01020, Ag2G00498, Ag9G01469
Arecaceae	Cocos nucifera	2	COCNU_02G017870, COCNU_16G001940
Arecaceae	Phoenix dactylifera	4	gene-LOC103695721, gene-LOC103701658, gene-LOC103716927 ... gene-LOC120111581
Asparagaceae	Asparagus officinalis	3	AsparagusV1_03.1554.V1.1, AsparagusV1_05.61.V1.1 ... AsparagusV1_07.1656.V1.1
Asteraceae	Flaveria trinervia	6	Ftri10G10531, Ftri16G19225, Ftri17G12387, Ftri18G02868 ... Ftri2G10438, Ftri6G00381
Brassicaceae	Arabidopsis thaliana	3	AT4G24580.1, AT5G12150.1, AT5G19390.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10012649m.g.v1.0, Thhalv10012698m.g.v1.0 ... Thhalv10024336m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp6g25020.v2.2, Sp6g31480.v2.2, Sp7g22580.v2.2
Brassicaceae	Brassica nigra	6	BniB02g043320.2N, BniB02g049950.2N, BniB02g081270.2N ... BniB03g013070.2N, BniB05g012620.2N, BniB05g044290.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq03G1219, Ceq05G1615
Casuarinaceae	Casuarina glauca	2	Cgl03G1323, Cgl05G1611
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno05g05610, gene.Cymno09g01250, gene.Cymno11g10110
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate06g07490, gene.Thate06g22020
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-12393, nbisL1-mrna-8782
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG06.1580, evm.TU.LG09.125
Plantaginaceae	Plantago ovata	3	Pov_00017200, Pov_00027423, Pov_00037198
Plumbaginaceae	Limonium bicolor	4	Lb3G15599, Lb3G15600, Lb3G15601, Lb6G31384
Poaceae	Echinochloa crus-galli	12	AH01.3596, AH01.4299, AH03.3949, AH06.31, BH01.3943, BH06.28 ... BH01.4604, BH03.4248, CH01.4207, CH01.4915, CH06.25, CH07.250
Poaceae	Eleusine coracana subsp. coracana	7	gene-QOZ80_3AG0248760, gene-QOZ80_3BG0279500 ... gene-QOZ80_3BG0286460, gene-QOZ80_6AG0505710, gene-QOZ80_6BG0457750, gene-QOZ80_7AG0580160, gene-QOZ80_7BG0611260
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.2HG0117090.1, HORVU.MOREX.r3.4HG0372920.1 ... HORVU.MOREX.r3.4HG0390910.1
Poaceae	Lolium multiflorum	5	gene-QYE76_008107, gene-QYE76_039096, gene-QYE76_067737 ... gene-QYE76_067785, gene-QYE76_069178
Poaceae	Oryza coarctata	6	Oco05G008570, Oco05G013820, Oco06G008890, Oco06G012530 ... Oco13G014760, Oco14G015580
Poaceae	Oryza sativa	4	LOC_Os03g11140.1, LOC_Os03g15180.1, LOC_Os03g24180.1 ... LOC_Os07g46450.1
Poaceae	Paspalum vaginatum	4	gene-BS78_01G350500, gene-BS78_01G412700 ... gene-BS78_02G370000, gene-BS78_10G002900
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0102111, Pt_Chr0102140, Pt_Chr0102745, Pt_Chr0305060
Poaceae	Sporobolus alterniflorus	9	Chr01G034960, Chr04G011620, Chr07G011030, Chr10G001070 ... Chr12G004650, Chr14G000100, Chr14G000440, Chr19G000910, Chr27G016520
Poaceae	Thinopyrum elongatum	3	Tel2E01G271600, Tel4E01G289600, Tel4E01G383000
Poaceae	Triticum dicoccoides	6	gene_TRIDC2AG016170, gene_TRIDC2BG019470 ... gene_TRIDC4AG011490, gene_TRIDC4AG025330, gene_TRIDC4BG027380, gene_TRIDC4BG038860
Poaceae	Triticum aestivum	9	TraesCS2A02G131400.3, TraesCS2B02G153800.3 ... TraesCS2D02G133500.2, TraesCS4A02G084500.1, TraesCS4A02G163400.1, TraesCS4B02G153200.1, TraesCS4B02G219700.1, TraesCS4D02G163800.1, TraesCS4D02G220100.1
Poaceae	Zea mays	8	Zm00001eb011160_P001, Zm00001eb017310_P001 ... Zm00001eb110720_P002, Zm00001eb222720_P001, Zm00001eb268580_P001, Zm00001eb329690_P003, Zm00001eb379420_P001, Zm00001eb398340_P001
Poaceae	Zoysia japonica	4	nbis-gene-1544, nbis-gene-3267, nbis-gene-51235 ... nbis-gene-53447
Poaceae	Zoysia macrostachya	5	Zma_g1181, Zma_g28959, Zma_g31212, Zma_g3617, Zma_g5711
Portulacaceae	Portulaca oleracea	6	evm.TU.LG04.1884, evm.TU.LG06.470, evm.TU.LG08.1425 ... evm.TU.LG18.1688, evm.TU.LG20.196, evm.TU.LG22.321
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g13630, gene.Posoc08g04230
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_12_RagTag.80, evm.TU.Scaffold_13_RagTag.984 ... evm.TU.Scaffold_7_RagTag.933, evm.TU.Scaffold_8_RagTag.809, evm.TU.Scaffold_8_RagTag.810
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-19397, nbisL1-mrna-24720, nbisL1-mrna-9429
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-15707, nbisL1-mrna-18063, nbisL1-mrna-20611 ... nbisL1-mrna-4915
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-16345, nbisL1-mrna-19388, nbisL1-mrna-20535 ... nbisL1-mrna-6761
Rhizophoraceae	Kandelia candel	5	evm.TU.utg000002l.711, evm.TU.utg000002l.712 ... evm.TU.utg000015l.585, evm.TU.utg000018l.479, evm.TU.utg000027l.524
Rhizophoraceae	Kandelia obovata	3	Maker00003117, Maker00015901, Maker00018181
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-11507, nbisL1-mrna-13051, nbisL1-mrna-4491 ... nbisL1-mrna-5473
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-10178, nbisL1-mrna-11618, nbisL1-mrna-17031 ... nbisL1-mrna-20810
Salicaceae	Populus euphratica	5	populus_peu01790, populus_peu11981, populus_peu14556 ... populus_peu32194, populus_peu36029
Solanaceae	Lycium barbarum	4	gene-LOC132619321, gene-LOC132626383, gene-LOC132627612 ... gene-LOC132643649
Solanaceae	Solanum chilense	3	SOLCI001222600, SOLCI002313900, SOLCI003459600
Solanaceae	Solanum pennellii	3	gene-LOC107004985, gene-LOC107006844, gene-LOC107018168
Tamaricaceae	Reaumuria soongarica	3	gene_15073, gene_5833, gene_9604
Tamaricaceae	Tamarix chinensis	3	TC02G2930, TC03G3003, TC09G2514
Zosteraceae	Zostera marina	3	Zosma01g10370.v3.1, Zosma03g17740.v3.1, Zosma06g13270.v3.1