Basic Information
Locus ID:
Ag2G00474
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Zinc finger (C3HC4-type RING finger) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 11676236 | 11679091 | - | Ag2G00474 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.13 | 78,876.76 Da | 57.16 | 81.58 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 153 | 198 | 5.99156E-9 | - |
| Pfam | PF17123 | RING-like zinc finger | 152 | 182 | 2.4E-9 | IPR001841 |
| Pfam | PF13519 | von Willebrand factor type A domain | 323 | 429 | 2.8E-14 | IPR002035 |
| SUPERFAMILY | SSF53300 | vWA-like | 320 | 431 | 3.71E-17 | IPR036465 |
| SUPERFAMILY | SSF57850 | RING/U-box | 147 | 205 | 8.99E-13 | - |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 322 | 479 | 6.3E-22 | IPR036465 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 143 | 206 | 1.8E-10 | IPR013083 |
| SMART | SM00327 | VWA_4 | 320 | 522 | 5.0E-13 | IPR002035 |
| SMART | SM00184 | ring_2 | 153 | 197 | 5.8E-7 | IPR001841 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 322 | 460 | 11.749758 | IPR002035 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 153 | 198 | 11.604098 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 69 | 98 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G49665.1 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_017249200.1 | PREDICTED: uncharacterized protein LOC108220065 [Daucus carota subsp. sativus] | 0 |
| Q9LTA6 | E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana OX=3702 GN=WAV3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A164ZLG9 | Zinc finger (C3HC4-type RING finger) family protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_019333 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.937176 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 2.239033 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 3.786167 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 3.707559 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 4.615335 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 6.963083 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 5.417339 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 3.603071 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 4.658619 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 4.449799 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 6.669382 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 10.820131 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 5.701977 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 4.980565 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 27.679333 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 21.425047 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 7.879559 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 7.808984 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 15.00698 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 10.097806 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 4.384305 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.824628 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 1.023146 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 1.869849 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 5.273398 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 1.204688 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 1.676864 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 1.145733 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.986369 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.140932 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.070515 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.227096 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 7.84286 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 3.943121 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 9.781343 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.297606 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.333003 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.355438 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.193541 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.681184 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.144141 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 6.018577 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 42.485146 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 3.391191 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 5.980838 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 3.310299 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 6.237608 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 2.32334 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 1.006542 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 2.496887 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg10776, jg19603, jg30755, jg39878 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_23663, gene_8810 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah012990, Ah036340 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g152940 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg29722, Sbi_jg43020, Sbi_jg43242, Sbi_jg45623 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg11468, Seu_jg18656 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00000178, GOSA_00002060 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl34959, Sgl41032, Sgl41079 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000000626, gene:ENSEOMG00000010814 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1AG0019100, CQ.Regalona.r1.1BG0004090 ... |
| Apiaceae | Apium graveolens | 2 | Ag2G00474, Ag4G01187 |
| Arecaceae | Cocos nucifera | 2 | COCNU_10G000020, scaffold004637G000020 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103703989, gene-LOC103708381 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_Unassigned.1068.V1.1 ... |
| Asteraceae | Flaveria trinervia | 4 | Ftri13G04760, Ftri18G07854, Ftri18G22084, Ftri2G31005 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT2G22680.1, AT4G37890.1, AT5G49665.1, AT5G65683.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003723m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 4 | Sp2g28760.v2.2, Sp4g01700.v2.2, Sp6g10790.v2.2 ... |
| Brassicaceae | Brassica nigra | 5 | BniB01g016300.2N, BniB01g021320.2N, BniB02g088880.2N ... |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1113 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno10g07490, gene.Cymno14g08280 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate05g15160, gene.Thate08g20790 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-10595, nbisL1-mrna-1175 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.2644, evm.TU.LG06.267 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00030064, Pov_00037151 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb1G05998, Lb4G23392, Lb8G36345, Lb8G36346 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.21, BH09.86, CH09.61 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0328430, gene-QOZ80_4BG0360440 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_038121 |
| Poaceae | Oryza coarctata | 2 | Oco07G001180, Oco08G000060 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g01160.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G002300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0305923, Pt_Chr0305965 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr0G006780, Chr23G019260, Chr23G019270, Chr25G016900 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G107400 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC2BG005280 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G045100.1, TraesCS2B02G057300.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb089670_P002, Zm00001eb281420_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-37579, nbis-gene-46869 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g19202, Zma_g20767, Zma_g20768 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG05.1001, evm.TU.LG12.1721, evm.TU.LG25.341 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc06g04150, gene.Posoc06g13600 |
| Rhizophoraceae | Bruguiera sexangula | 4 | evm.TU.Scaffold_3_RagTag.1157, evm.TU.Scaffold_6_RagTag.1735 ... |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-17423, nbisL1-mrna-19347, nbisL1-mrna-817 ... |
| Rhizophoraceae | Ceriops tagal | 4 | nbisL1-mrna-1310, nbisL1-mrna-17066, nbisL1-mrna-1889 ... |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-12032, nbisL1-mrna-20579, nbisL1-mrna-2410 ... |
| Rhizophoraceae | Kandelia candel | 4 | add.evm.TU.utg000011l.426, add.evm.TU.utg000019l.242 ... |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003189, Maker00010431 |
| Rhizophoraceae | Rhizophora apiculata | 4 | nbisL1-mrna-11483, nbisL1-mrna-13083, nbisL1-mrna-19227 ... |
| Rhizophoraceae | Rhizophora mangle | 4 | nbisL1-mrna-10132, nbisL1-mrna-17071, nbisL1-mrna-1849 ... |
| Salicaceae | Populus euphratica | 1 | populus_peu32159 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132623012, gene-LOC132627676 |
| Solanaceae | Solanum chilense | 2 | SOLCI001438800, SOLCI003422300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008630 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.16345_chr06_-, STRG.31194_chr11_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G2781, TC09G0284 |
| Zosteraceae | Zostera marina | 3 | Zosma01g19850.v3.1, Zosma02g16480.v3.1, Zosma05g30680.v3.1 |