halophFGD

Basic Information

Locus ID: Ag2G00472

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2	11568675	11571748	+	Ag2G00472

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.80	108,373.43 Da	35.41	99.86	-0.09

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13855	Leucine rich repeat	481	540	2.3E-6	IPR001611
Pfam	PF00560	Leucine Rich Repeat	195	216	1.9	IPR001611
Pfam	PF00069	Protein kinase domain	668	951	1.9E-43	IPR000719
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	661	954	9.31E-73	IPR011009
SUPERFAMILY	SSF52047	RNI-like	284	570	4.24E-49	-
SUPERFAMILY	SSF52058	L domain-like	50	358	1.02E-49	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	28	186	2.7E-32	IPR032675
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	637	759	8.4E-18	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	289	599	1.8E-82	IPR032675
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	760	960	2.3E-59	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	187	286	3.1E-26	IPR032675
SMART	SM00220	serkin_6	666	953	4.1E-33	IPR000719
ProSiteProfiles	PS51450	Leucine-rich repeat profile.	121	143	7.088198	IPR001611
ProSiteProfiles	PS50011	Protein kinase domain profile.	666	960	37.742741	IPR000719
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	805	817	-	IPR008271
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	672	705	-	IPR017441

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G09970.1	Leucine-rich receptor-like protein kinase family protein. RLK7 belongs to a leucine-rich repeat class of receptor-likekinase (LRR-RLKs). It is involved in the control of germination speed and the tolerance to oxidant stress.
RefSeq	XP_017251482.1	PREDICTED: receptor-like protein kinase HAIKU2 [Daucus carota subsp. sativus]
Swiss-Prot	F4I2N7	Receptor-like protein kinase 7 OS=Arabidopsis thaliana OX=3702 GN=RLK7 PE=1 SV=1
TrEMBL	A0A164ZLI9	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_019335 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0.066092	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0.187007	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0.184946	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0.041747	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0.381336	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0.114332	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0.419872	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0.361909	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0.162473	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.09796		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.37493		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0.375094		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.530814		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.653402		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.53408		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	1.025911	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.285882	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	3.556175	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.359563	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.156253	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.349177	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	1.450967	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.132907	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0.057861	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0.02713	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0.190849	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg10766, jg19348, jg6162
Aizoaceae	Mesembryanthemum crystallinum	1	gene_8825
Amaranthaceae	Atriplex hortensis	1	Ah036492
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg39544, Sbi_jg54770
Amaranthaceae	Salicornia europaea	1	Seu_jg14789
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00028522
Amaranthaceae	Suaeda glauca	2	Sgl12682, Sgl17922
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000018473, gene:ENSEOMG00000036411 ... gene:ENSEOMG00000047216
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.1AG0020330, CQ.Regalona.r1.1BG0004780
Anacardiaceae	Pistacia vera	3	pistato.v30042510, pistato.v30099080, pistato.v30103470
Apiaceae	Apium graveolens	4	Ag1G00661, Ag2G00472, Ag4G01884, Ag9G00250
Arecaceae	Cocos nucifera	1	COCNU_06G019300
Arecaceae	Phoenix dactylifera	2	gene-LOC103705762, gene-LOC120104079
Asparagaceae	Asparagus officinalis	1	AsparagusV1_03.721.V1.1
Asteraceae	Flaveria trinervia	3	Ftri14G21189, Ftri16G32708, Ftri4G21841
Brassicaceae	Arabidopsis thaliana	2	AT1G09970.2, AT3G19700.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10006696m.g.v1.0, Thhalv10022054m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g08630.v2.2, Sp3g17740.v2.2
Brassicaceae	Brassica nigra	3	BniB02g005110.2N, BniB03g003650.2N, BniB07g051070.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq03G2730, Ceq03G2731, Ceq09G0507
Casuarinaceae	Casuarina glauca	3	Cgl03G2871, Cgl03G2872, Cgl09G0547
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno01g14310
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g31570, gene.Thate06g14080
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-1179, nbisL1-mrna-12394
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG06.275, evm.TU.LG08.683
Plantaginaceae	Plantago ovata	1	Pov_00037137
Plumbaginaceae	Limonium bicolor	2	Lb4G23386, Lb7G32874
Poaceae	Echinochloa crus-galli	3	AH05.4194, BH05.4275, CH05.4504
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_5AG0399330, gene-QOZ80_5AG0399340 ... gene-QOZ80_5BG0448020, gene-QOZ80_5BG0448030
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.1HG0088480.1.CDS1 ... HORVU.MOREX.r3.5HG0421310.1.CDS1
Poaceae	Lolium multiflorum	2	gene-QYE76_000162, gene-QYE76_000163
Poaceae	Oryza coarctata	2	Oco23G011120, Oco24G010930
Poaceae	Oryza sativa	2	LOC_Os11g33380.1, LOC_Os12g43640.1
Poaceae	Paspalum vaginatum	1	gene-BS78_08G166000
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0704392, Pt_Chr0704400
Poaceae	Sporobolus alterniflorus	3	Chr04G019800, Chr06G020720, Chr19G007130
Poaceae	Thinopyrum elongatum	1	Tel5E01G031200
Poaceae	Triticum dicoccoides	1	gene_TRIDC5BG002040
Poaceae	Triticum aestivum	5	TraesCS1A02G103900.1.cds1, TraesCS1B02G381300.1.cds1 ... TraesCS1D02G407200.1.cds1, TraesCS5B02G012000.1.cds1, TraesCS5D02G019400.1.cds1
Poaceae	Zea mays	1	Zm00001eb134290_P001
Poaceae	Zoysia macrostachya	2	Zma_g25399, Zma_g26192
Portulacaceae	Portulaca oleracea	2	evm.TU.LG12.1733, evm.TU.LG12.1734
Posidoniaceae	Posidonia oceanica	1	gene.Posoc03g26960
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_2_RagTag.448, evm.TU.Scaffold_7_RagTag.878 ... evm.TU.Scaffold_8_RagTag.856
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-19335, nbisL1-mrna-4750, nbisL1-mrna-9380 ... nbisL1-mrna-9381
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-10356, nbisL1-mrna-1060, nbisL1-mrna-2021
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-20586, nbisL1-mrna-6707, nbisL1-mrna-9718
Rhizophoraceae	Kandelia candel	3	add.evm.TU.utg000002l.264, add.evm.TU.utg000018l.92 ... evm.TU.utg000009l.691
Rhizophoraceae	Kandelia obovata	3	Maker00003231, Maker00004916, Maker00010864
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-11476, nbisL1-mrna-17745, nbisL1-mrna-22020
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-10125, nbisL1-mrna-16530, nbisL1-mrna-17078
Salicaceae	Populus euphratica	2	populus_peu32166, populus_peu36155
Solanaceae	Lycium barbarum	2	gene-LOC132598892, gene-LOC132627686
Solanaceae	Solanum chilense	2	SOLCI001114500, SOLCI005026100
Solanaceae	Solanum pennellii	2	gene-LOC107001432, gene-LOC107004758
Tamaricaceae	Reaumuria soongarica	3	STRG.28054_chr04_+, gene_1807, gene_4747
Tamaricaceae	Tamarix chinensis	2	TC04G2766, TC10G2332
Zosteraceae	Zostera marina	1	Zosma05g29130.v3.1