Basic Information
Locus ID:
Ag2G00450
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Protein ENHANCED DISEASE RESISTANCE 2-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 10786239 | 10799957 | - | Ag2G00450 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.85 | 76,675.44 Da | 47.91 | 79.68 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00177 | START | 210 | 396 | 3.90114E-31 | - |
| CDD | cd00821 | PH | 27 | 126 | 0.00748793 | - |
| Pfam | PF07059 | Protein of unknown function (DUF1336) | 534 | 605 | 8.1E-15 | IPR009769 |
| Pfam | PF01852 | START domain | 237 | 382 | 1.2E-7 | IPR002913 |
| Pfam | PF07059 | Protein of unknown function (DUF1336) | 614 | 669 | 1.8E-17 | IPR009769 |
| SUPERFAMILY | SSF50729 | PH domain-like | 22 | 132 | 7.21E-6 | - |
| SUPERFAMILY | SSF55961 | Bet v1-like | 201 | 377 | 3.16E-29 | - |
| Gene3D | G3DSA:3.30.530.20 | - | 204 | 418 | 7.4E-27 | IPR023393 |
| SMART | SM00233 | PH_update | 25 | 133 | 0.0014 | IPR001849 |
| ProSiteProfiles | PS50848 | START domain profile. | 206 | 396 | 19.800795 | IPR002913 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 446 | 466 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 446 | 462 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G35180.1 | Protein of unknown function (DUF1336). | 0 |
| RefSeq | XP_017251565.1 | PREDICTED: protein ENHANCED DISEASE RESISTANCE 2-like isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q8VZF6 | Protein ENHANCED DISEASE RESISTANCE 2-like OS=Arabidopsis thaliana OX=3702 GN=EDR2L PE=2 SV=1 | 0 | |
| TrEMBL | A0A164ZM26 | START domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_019353 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 1.736337 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 3.281022 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 2.791111 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 1.872384 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 1.805114 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.753435 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 2.062572 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.595348 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0.2476 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0.070609 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0.435681 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.031421 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.077449 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.034754 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.085019 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.084428 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.025413 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.174265 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 2.207809 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.035625 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.15639 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.101671 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.063435 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 2.783174 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 7.530337 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 6.034881 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg31577 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8914 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah008542, Ah014173 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g192590 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25430, Sbi_jg9273 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19320 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011105 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl41844, Sgl46644 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010446, gene:ENSEOMG00000032016 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.8AG0023400, CQ.Regalona.r1.8AG0023410 ... |
| Apiaceae | Apium graveolens | 2 | Ag2G00450, Ag3G01372 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G011910 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719029 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.799.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri15G13973, Ftri3G13089, Ftri7G22913 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G35180.4 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003438m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g07190.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g018090.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2506 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2643 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g06550 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g20250 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-271 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.165 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00000945 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G03768, Lb6G31991 |
| Poaceae | Echinochloa crus-galli | 2 | BH08.1726, CH08.1866 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_8AG0632110, gene-QOZ80_8AG0632120 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0470940.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_031395, gene-QYE76_032016 |
| Poaceae | Oryza coarctata | 1 | Oco16G008700 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g34060.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G148000 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr16G015130, Chr17G014600 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G297600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG028370, gene_TRIDC5BG029760 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G173000.1, TraesCS5B02G170400.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb041240_P001, Zm00001eb041250_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-17044, nbis-gene-17049 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g24120 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1110, evm.TU.LG05.1653 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g12300 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_10_RagTag.155, evm.TU.Scaffold_4_RagTag.2214 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-13940, nbisL1-mrna-25262, nbisL1-mrna-9713 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13169, nbisL1-mrna-21259 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-16587, nbisL1-mrna-4967, nbisL1-mrna-4968 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.1302, evm.TU.utg000033l.97 |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00000049, Maker00001185, Maker00014702 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16672, nbisL1-mrna-1881 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-14543, nbisL1-mrna-22252 |
| Salicaceae | Populus euphratica | 1 | populus_peu05640 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132603055 |
| Solanaceae | Solanum chilense | 1 | SOLCI000899000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026334 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.12327_chr02_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1096 |
| Zosteraceae | Zostera marina | 1 | Zosma03g01770.v3.1 |