Basic Information
Locus ID:
Ag2G00449
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 10780876 | 10784032 | - | Ag2G00449 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.77 | 100,356.08 Da | 33.76 | 98.05 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 295 | 316 | 0.13 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 126 | 148 | 1.5 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 668 | 901 | 2.6E-21 | IPR001245 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 31 | 72 | 1.3E-5 | IPR013210 |
| SUPERFAMILY | SSF52047 | RNI-like | 80 | 402 | 1.73E-60 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 313 | 576 | 5.1E-47 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 660 | 902 | 1.52E-36 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 293 | 581 | 4.2E-74 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 620 | 720 | 3.5E-11 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 29 | 189 | 3.4E-39 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 190 | 288 | 2.3E-28 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 721 | 907 | 9.7E-27 | - |
| SMART | SM00220 | serkin_6 | 652 | 902 | 1.4E-5 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 648 | 905 | 21.545176 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 763 | 775 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G51350.1 | Leucine-rich repeat transmembrane protein kinase family protein. | 0 |
| RefSeq | XP_017248925.1 | PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Daucus carota subsp. sativus] | 0 |
| Q9FII5 | Leucine-rich repeat receptor-like protein kinase TDR OS=Arabidopsis thaliana OX=3702 GN=TDR PE=1 SV=1 | 0 | |
| TrEMBL | A0A162A4K1 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_019354 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 1.226099 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.793331 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.920572 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 1.036999 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.869252 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.446071 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.665372 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.635097 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 4.974935 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 4.4653 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 5.649175 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 5.656875 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 3.553494 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 3.651964 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.293069 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1.730635 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 7.038342 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 5.606925 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 5.575698 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 4.286201 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 6.561073 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 31.39739 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 28.574295 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 37.553539 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 28.27243 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 14.072403 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 10.030398 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 11.202348 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 13.783868 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.567848 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.16809 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.388085 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.911564 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 6.901782 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.294106 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.229378 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.110224 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.105019 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 9.968494 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 5.367328 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.832742 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.473287 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 1.300551 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 3.831353 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 5.347652 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 1.063368 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 20.122988 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 9.648199 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 16.74856 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 14.016096 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8913 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014172 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g172330 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg1600, Sbi_jg34960 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg3150 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003349 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl72772, Sgl76310 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009288, gene:ENSEOMG00000033946 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0023440, CQ.Regalona.r1.8BG0018920 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30179450 |
| Apiaceae | Apium graveolens | 1 | Ag2G00449 |
| Asteraceae | Flaveria trinervia | 2 | Ftri14G00365, Ftri7G17717 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G51350.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005775m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g06380.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g070710.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2507 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2644 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-272 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.175 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00015559 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G31990 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1111, evm.TU.LG05.1654 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.154 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13939 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-21260 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16586 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000033l.96 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014990 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16673 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-14542 |
| Salicaceae | Populus euphratica | 2 | populus_peu05639, populus_peu12278 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132603054 |
| Solanaceae | Solanum chilense | 1 | SOLCI000899100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107025774 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.12325_chr02_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1097 |