Basic Information
Locus ID:
Ag2G00446
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 10524052 | 10528628 | + | Ag2G00446 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 39,820.49 Da | 40.55 | 81.17 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 220 | 252 | 0.0098 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 68 | 356 | 1.31E-35 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 85 | 359 | 1.9E-58 | IPR015943 |
| SMART | SM00320 | WD40_4 | 212 | 252 | 8.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 260 | 295 | 36.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 127 | 167 | 0.039 | IPR001680 |
| SMART | SM00320 | WD40_4 | 82 | 121 | 7.8 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 219 | 254 | 9.599237 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 219 | 254 | 11.477578 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 239 | 253 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80710.1 | DROUGHT SENSITIVE 1. Encodes a WD40 repeat family protein containing a DWD (DDB1 binding WD40) motif. Mutant analysis demonstrates that DRS1 promotes tolerance to drought stress, possibly mediated by ABA, and suggests involvement of DDB1 Cul4mediated protein degradation in drought response. | 0 |
| RefSeq | XP_017250289.1 | PREDICTED: WD repeat-containing protein 76 [Daucus carota subsp. sativus] | 0 |
| Q4KLQ5 | WD repeat-containing protein 76 OS=Xenopus laevis OX=8355 GN=wdr76 PE=2 SV=1 | 0 | |
| TrEMBL | A0A164ZMB2 | WD_REPEATS_REGION domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_019365 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 8.305474 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 5.967377 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 5.928003 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 6.09731 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 5.939638 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 7.612379 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 6.820027 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 7.454635 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 17.137787 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 17.664967 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 20.59976 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 23.372976 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 19.039425 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 14.692242 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 2.654668 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 3.625322 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 5.28673 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 6.065531 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 5.884916 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 5.086958 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 5.321105 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 5.84297 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 7.43314 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 7.090192 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 7.471423 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 7.78571 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 8.628009 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 6.742457 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 7.085577 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 4.390602 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 5.807759 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 4.341353 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 10.035274 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 12.717113 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 9.844879 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 7.08349 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 4.028936 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.18287 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 15.151218 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 6.432384 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 6.870502 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 5.589849 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 3.70648 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 9.007054 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 7.095537 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 5.21593 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 7.147598 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 18.047337 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 12.959689 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 10.897202 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg31573 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_10565, gene_10566, gene_5279 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005932 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g006430 |
| Amaranthaceae | Salicornia bigelovii | 8 | Sbi_jg16941, Sbi_jg17543, Sbi_jg2329, Sbi_jg34179 ... |
| Amaranthaceae | Salicornia europaea | 4 | Seu_jg218, Seu_jg2438, Seu_jg791, Seu_jg792 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008294 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl24709, Sgl25350, Sgl29862, Sgl30525 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008388, gene:ENSEOMG00000028509 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0009420, CQ.Regalona.r1.4BG0009560 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30179380 |
| Apiaceae | Apium graveolens | 2 | Ag2G00445, Ag2G00446 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G003820 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103696390 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.90.V1.1, AsparagusV1_04.1084.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G05841, Ftri5G22379 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G80710.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018400m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g35040.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB04g020320.2N, BniB06g068240.2N, BniB06g068250.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2512 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2649 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g09670 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0241s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g06380 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG07.214, evm.TU.LG07.219 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00000940 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb4G21544, Lb4G21545, Lb4G26411 |
| Poaceae | Echinochloa crus-galli | 7 | AH08.1086, AH08.1093, BH08.1034, BH08.1037, BH08.1039 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0625000, gene-QOZ80_8BG0653680 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0189360.1, HORVU.MOREX.r3.7HG0640440.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_032205 |
| Poaceae | Oryza coarctata | 2 | Oco15G005640, Oco16G005420 |
| Poaceae | Oryza sativa | 2 | LOC_Os08g18150.1, LOC_Os08g18880.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G086400 |
| Poaceae | Puccinellia tenuiflora | 9 | Pt_Chr0201779, Pt_Chr0206176, Pt_Chr0206178, Pt_Chr0206179 ... |
| Poaceae | Sporobolus alterniflorus | 5 | Chr16G012190, Chr17G011580, Chr17G011590, Chr20G008570 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G704100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG013110, gene_TRIDC2AG059600 ... |
| Poaceae | Triticum aestivum | 8 | TraesCS1A02G091700.1, TraesCS1A02G121100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb028210_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-49443 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g22764, Zma_g23872, Zma_g23874 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG04.1115, evm.TU.LG05.1657, evm.TU.LG18.1156 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g24000 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.150 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13936 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-21263 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16583 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000033l.94 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015100 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16675 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-14539 |
| Salicaceae | Populus euphratica | 1 | populus_peu05635 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132622142, gene-LOC132632356 |
| Solanaceae | Solanum chilense | 1 | SOLCI003919700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009017 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9036 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1103 |