Basic Information
Locus ID:
Ag2G00423
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
BTB/POZ domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 9731283 | 9733957 | + | Ag2G00423 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.31 | 50,246.86 Da | 34.38 | 75.61 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18316 | BTB_POZ_KCTD-like | 8 | 91 | 8.90209E-23 | - |
| Pfam | PF02214 | BTB/POZ domain | 8 | 96 | 4.3E-15 | IPR003131 |
| SUPERFAMILY | SSF54695 | POZ domain | 6 | 99 | 8.83E-22 | IPR011333 |
| SUPERFAMILY | SSF50969 | YVTN repeat-like/Quinoprotein amine dehydrogenase | 106 | 438 | 2.51E-8 | IPR011044 |
| Gene3D | G3DSA:2.130.10.10 | - | 114 | 363 | 2.4E-5 | IPR015943 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 2 | 110 | 1.5E-24 | IPR011333 |
| SMART | SM00225 | BTB_4 | 6 | 109 | 6.9E-13 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 6 | 77 | 10.261317 | IPR000210 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24240.1 | BTB/POZ domain with WD40/YVTN repeat-like protein. | 0 |
| RefSeq | XP_017253893.1 | PREDICTED: BTB/POZ domain-containing protein At2g24240-like [Daucus carota subsp. sativus] | 0 |
| Q9ZUH1 | BTB/POZ domain-containing protein At2g24240 OS=Arabidopsis thaliana OX=3702 GN=At2g24240 PE=2 SV=1 | 0 | |
| TrEMBL | A0A164ZMT6 | BTB domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_019388 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 2.749664 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 6.18526 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 7.838447 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 9.504183 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 8.468017 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 12.551091 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 6.811281 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 11.343193 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 4.346516 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 4.129595 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 5.55714 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 5.553785 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 4.728198 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 4.935053 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 2.195439 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 2.897215 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 3.988344 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 3.982095 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 3.784388 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 5.770212 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 4.485034 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 12.013021 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 11.453032 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 9.668982 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 11.020959 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 4.519092 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 4.008319 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 4.631126 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 3.848883 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.057182 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.215655 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.579789 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 5.221492 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 5.798594 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 4.811232 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.839723 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.401943 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.214097 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 2.240146 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.185998 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.898445 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 16.219557 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 17.813856 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 23.409132 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 28.331045 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 14.879794 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 16.921265 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 12.082428 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 9.295509 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 8.943673 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg15590, jg31544 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25296 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah031681 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg19389, Sbi_jg43963 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg17972 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018909 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl65242, Sgl65244, Sgl69655 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000015168, gene:ENSEOMG00000020478 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0000220, CQ.Regalona.r1.4AG0024150 |
| Apiaceae | Apium graveolens | 1 | Ag2G00423 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G005160, COCNU_11G012020 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103710478, gene-LOC103714238 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.1861.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G06711 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G24240.1, AT4G30940.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10000165m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g03210.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g022060.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G2550, Ceq03G2599 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G2689, Cgl03G2748 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g05970 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g09520 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-280 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.274 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00000857 |
| Poaceae | Echinochloa crus-galli | 5 | AH07.2580, BH07.2392, BH09.1656, CH07.2466, CH09.1765 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0137260, gene-QOZ80_4AG0311690 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0179320.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_023569 |
| Poaceae | Oryza coarctata | 3 | Oco04G015700, Oco07G009900, Oco08G009680 |
| Poaceae | Oryza sativa | 3 | LOC_Os02g39910.1, LOC_Os04g42310.1, LOC_Os06g06480.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_04G194100, gene-BS78_06G150700 ... |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0204572, Pt_Chr0204629, Pt_Chr0302220 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr06G008430, Chr13G007720, Chr15G009940, Chr23G009490 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G623400, Tel6E01G426200 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC1BG064300, gene_TRIDC2AG051650 ... |
| Poaceae | Triticum aestivum | 10 | TraesCS1A02G380600.1, TraesCS1B02G402800.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb172250_P001, Zm00001eb425960_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-18549, nbis-gene-29670, nbis-gene-37000 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g13881, Zma_g16657, Zma_g19995 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.321, evm.TU.LG26.717 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g12730 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-13914, nbisL1-mrna-25300 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-21280, nbisL1-mrna-5648 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4932 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000008l.471, add.evm.TU.utg000033l.25 |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00000797, Maker00014624, Maker00014868 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-17482, nbisL1-mrna-22177, nbisL1-mrna-23533 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-14519, nbisL1-mrna-9211 |
| Salicaceae | Populus euphratica | 2 | populus_peu05593, populus_peu12234 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132602973, gene-LOC132638026, gene-LOC132638829 |
| Solanaceae | Solanum chilense | 7 | SOLCI001360000, SOLCI002621600, SOLCI003769300 ... |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107005936, gene-LOC107005937, gene-LOC107005938 ... |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9051 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1056 |