Basic Information
Locus ID:
Ag2G00407
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 9040835 | 9043084 | - | Ag2G00407 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 35,186.68 Da | 47.21 | 84.32 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF81383 | F-box domain | 15 | 71 | 1.03E-6 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 109 | 275 | 8.83E-23 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 101 | 283 | 2.4E-35 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 17 | 58 | 1.1E-8 | - |
| SMART | SM00367 | LRR_CC_2 | 244 | 269 | 12.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 121 | 146 | 1.2E-5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 147 | 172 | 0.014 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57900.1 | SKP1 interacting partner 1. F-box protein, interacts with SKP1/ASK1 subunit of SCF ubiquitin ligase in a glucose-dependent manner | 0 |
| RefSeq | XP_017252779.1 | PREDICTED: F-box protein SKIP1 [Daucus carota subsp. sativus] | 0 |
| Q9FDX1 | F-box protein SKIP1 OS=Arabidopsis thaliana OX=3702 GN=SKIP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A164ZNA8 | F-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_019403 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 22.245754 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 15.77597 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 22.478689 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 20.69982 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 18.419704 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 28.081177 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 27.385296 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 39.853706 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 14.827662 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 14.975226 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 13.503954 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 14.522488 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 12.229651 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 11.298488 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 11.367617 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 8.116296 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 10.056787 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 12.632633 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 8.769849 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 11.237469 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 14.724438 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 9.194966 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 9.17269 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 10.115833 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 8.325144 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 11.387895 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 9.743009 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 9.508693 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 9.713831 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 12.776525 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 9.359154 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 9.172073 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 33.971802 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 18.219522 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 30.203785 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 29.543098 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 17.269176 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 21.478088 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 6.607662 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 10.715356 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 5.119164 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 25.610558 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 59.938324 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 47.477749 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 52.958794 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 14.62602 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 37.147182 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 5.426729 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 6.79377 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 7.219582 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg4007 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9226 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah014957, Ah014958, Ah014963 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g191330 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24752, Sbi_jg8619 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19990 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022305 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl42666, Sgl47400 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000010769, gene:ENSEOMG00000033405 |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.8AG0016970, CQ.Regalona.r1.8AG0016980 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30265550 |
| Apiaceae | Apium graveolens | 2 | Ag2G00406, Ag2G00407 |
| Arecaceae | Cocos nucifera | 3 | COCNU_01G014620, COCNU_01G014630, scaffold003326G000030 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103722057 |
| Asteraceae | Flaveria trinervia | 1 | Ftri7G07890 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G30640.1, AT5G57900.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10014209m.g.v1.0, Thhalv10014217m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 5 | Sp3g32280.v2.2, Sp6g19570.v2.2, Sp7g28520.v2.2 ... |
| Brassicaceae | Brassica nigra | 9 | BniB02g037230.2N, BniB02g084890.2N, BniB02g084900.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2590 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2738 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g07420 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g10290 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-282 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG06.872, evm.TU.LG06.874, evm.TU.LG07.306 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G01159, Lb3G16712, Lb7G33206 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.940, BH08.963, CH08.1082 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_8BG0652940 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0011890.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_032262, gene-QYE76_032275 |
| Poaceae | Oryza coarctata | 2 | Oco15G005320, Oco16G005070 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g16840.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_10G167800, gene-BS78_K076700, gene-BS78_K105400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0402798 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr16G003600, Chr17G003270, Chr20G008910 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG007670, gene_TRIDC1BG009770 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G056500.2, TraesCS1B02G073600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb177870_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-44740, nbis-gene-57102 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g22736 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2558, evm.TU.LG23.788 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g13390 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.2165 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25319 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-7509, nbisL1-mrna-7512 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-4916, nbisL1-mrna-4917 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.1266 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000935 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17486, nbisL1-mrna-1927 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-9226, nbisL1-mrna-9228 |
| Salicaceae | Populus euphratica | 1 | populus_peu05571 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132602068, gene-LOC132606164, gene-LOC132630842 |
| Solanaceae | Solanum chilense | 1 | SOLCI000280200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107024020 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9538 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G0411 |