Basic Information
Locus ID:
Ag2G00394
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
FAD binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 8795200 | 8800643 | + | Ag2G00394 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.90 | 70,984.46 Da | 34.36 | 88.94 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01494 | FAD binding domain | 218 | 256 | 9.6E-6 | IPR002938 |
| SUPERFAMILY | SSF51905 | FAD/NAD(P)-binding domain | 216 | 627 | 3.74E-23 | IPR036188 |
| Gene3D | G3DSA:3.30.70.2700 | - | 67 | 153 | 9.7E-6 | - |
| Gene3D | G3DSA:3.50.50.60 | - | 570 | 632 | 1.8E-10 | IPR036188 |
| Gene3D | G3DSA:3.50.50.60 | - | 315 | 388 | 3.4E-7 | IPR036188 |
| Gene3D | G3DSA:3.50.50.60 | - | 209 | 314 | 3.0E-38 | IPR036188 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G30720.1 | FAD/NAD(P)-binding oxidoreductase family protein. Encodes a putative oxidoreductase/electron carrier detected in the chloroplast stroma that is essential to ensure a correct electron flow through the photosynthetic chain and, hence, photosynthesis efficiency and normal growth. Mutations in the Col-0 allele result in pale green pigmentation and defective growth. | 0 |
| RefSeq | XP_017253448.1 | PREDICTED: uncharacterized protein Cbei_0202 [Daucus carota subsp. sativus] | 0 |
| Q05627 | Uncharacterized protein Cbei_0202 OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) OX=290402 GN=Cbei_0202 PE=4 SV=2 | 0 | |
| TrEMBL | A0A162A4P7 | Ubiquitin-like domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_019414 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 1.976916 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 2.93933 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 2.595667 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 2.218966 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 2.935043 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 4.401078 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 2.165253 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.966114 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 9.592516 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 8.576283 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 9.499236 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 8.019188 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 8.33138 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 5.788417 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.738878 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 2.245305 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 3.13382 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 5.970185 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 6.439571 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 2.880659 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 3.209144 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 2.926598 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 3.885791 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 4.768631 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 4.150033 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 6.977805 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 5.943739 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 8.505387 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 5.869905 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.698695 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.066496 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.629932 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 3.713162 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 4.598864 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 3.452965 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.509566 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.509548 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.461783 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 24.676506 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 13.866348 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 12.857692 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 1.372751 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.98802 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 3.543831 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 2.471225 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 2.38051 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 2.452638 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 7.208512 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 7.863071 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 5.158879 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg4012 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10883 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014937 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_8g191510, BVRB_8g191520 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24767, Sbi_jg8631 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19974 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022294 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl42639, Sgl42650, Sgl47384 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009308, gene:ENSEOMG00000032281 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0017100, CQ.Regalona.r1.8BG0018150 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30264900 |
| Apiaceae | Apium graveolens | 1 | Ag2G00394 |
| Arecaceae | Cocos nucifera | 1 | scaffold000539G000050 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103720589, gene-LOC120109602 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.23.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri4G24652 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G30720.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024548m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g28630.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g084990.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2600 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2749 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g08610 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g24970 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.346 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00000788, Pov_00041633 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G07324, Lb1G07325 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.2457, BH05.2553, CH05.2649 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0373260, gene-QOZ80_5BG0420540 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0065010.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_013265 |
| Poaceae | Oryza coarctata | 1 | Oco09G009560 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g34040.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G143700 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0505088, Pt_Chr0505228 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr18G009310, Chr22G008390 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G425900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG038550, gene_TRIDC1BG043750 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G258000.1, TraesCS1B02G268400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb288040_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-13925 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g27209 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2581, evm.TU.LG02.2582 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g18990 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.178 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13409 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-21241 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16604 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000033l.116 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015004 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16652 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-14563 |
| Salicaceae | Populus euphratica | 1 | populus_peu05559 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132602934 |
| Solanaceae | Solanum chilense | 1 | SOLCI004192200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026340 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8168 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1021 |
| Zosteraceae | Zostera marina | 1 | Zosma03g12780.v3.1 |