Basic Information
Locus ID:
Ag2G00393
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Ubiquitin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 8791646 | 8794637 | + | Ag2G00393 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.48 | 11,909.28 Da | 45.33 | 82.50 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 5 | 76 | 1.8E-11 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 79 | 2.03E-18 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 92 | 2.9E-21 | - |
| SMART | SM00213 | ubq_7 | 3 | 75 | 2.4E-11 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 15.66661 | IPR000626 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57860.1 | Ubiquitin-like superfamily protein. | 0 |
| RefSeq | XP_017253449.1 | PREDICTED: polyubiquitin 9 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A5B6YV17 | Putative Ubiquitin-like superfamily protein OS=Davidia involucrata OX=16924 GN=Din_005038 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 68.170486 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 44.620338 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 35.118645 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 35.72126 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 34.23333 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 33.270912 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 36.487568 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 20.610882 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 111.001343 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 97.893105 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 100.701981 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 114.212349 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 107.05941 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 122.523643 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 124.185516 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 107.552406 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 121.457024 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 87.348465 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 94.119705 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 90.13549 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 121.650291 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 100.744308 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 126.595795 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 112.430153 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 116.155434 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 76.473969 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 104.453758 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 91.152 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 104.496391 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 58.305119 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 73.383499 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 75.16304 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 50.043583 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 116.586578 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 53.745434 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 123.275452 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 41.713078 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 77.713524 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 50.779354 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 60.60704 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 25.508312 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 78.751579 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 146.846558 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 133.319946 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 133.73468 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 107.449844 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 124.208557 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 189.42215 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 197.318878 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 202.702637 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg33104 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_12298, gene_3110 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah018194, Ah038376 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15310, Sbi_jg56127 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26606 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020220 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02203, Sgl07358 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011238, gene:ENSEOMG00000029647 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0009000, CQ.Regalona.r1.3BG0009530 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30264970 |
| Apiaceae | Apium graveolens | 1 | Ag2G00393 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G014550 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103720445, gene-LOC103722012, gene-LOC120103676 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.3418.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | FtriNA22378 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G57860.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10015128m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g19550.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g037210.2N, BniB02p000239.2N, BniB05g037440.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2601 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2750 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g09880 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0635s00009.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g06120 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.367 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00000770, Pov_00000777 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G13133, Lb2G13141 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0579510, gene-QOZ80_7BG0610670 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0119180.1 |
| Poaceae | Oryza coarctata | 2 | Oco05G014130, Oco06G012180 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g24920.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G375800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0102770, Pt_Chr0102791 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G035190, Chr04G011920, Chr07G011240, Chr12G004430 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G289500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG017780, gene_TRIDC2BG021540 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G142700.1, TraesCS2B02G167800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb329210_P001 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g3593, Zma_g5679 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.3105, evm.TU.LG16.481 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g24560 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.179 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13408 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8758 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4909 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.1260, evm.TU.utg000033l.117 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015044 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16651, nbisL1-mrna-1934 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-14564, nbisL1-mrna-9237 |
| Salicaceae | Populus euphratica | 2 | populus_peu12206, populus_peu14365 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132640026 |
| Solanaceae | Solanum chilense | 1 | SOLCI002425200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107020334 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_12712 |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G1313 |
| Zosteraceae | Zostera marina | 1 | Zosma04g18140.v3.1 |