halophFGD

Basic Information

Locus ID: Ag2G00390

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: F-box kelch-repeat protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2	8662495	8676904	-	Ag2G00390

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.72	24,426.97 Da	48.93	80.58	-0.49

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	36	71	1.3E-5	IPR001810
SUPERFAMILY	SSF81383	F-box domain	35	83	7.33E-12	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	34	73	1.7E-8	-
SMART	SM00256	fbox_2	36	77	1.5E-4	IPR001810

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G41473.1	F-box family protein.
RefSeq	XP_023739762.1	uncharacterized protein LOC111887854 [Lactuca sativa]
TrEMBL	A0A6L5BB42	F-box domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_007711 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	3.392151	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	4.207336	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	4.827114	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	4.159215	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	5.300565	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	5.362906	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	4.289206	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	5.351217	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	6.952513	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	6.279052	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	6.14431	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	6.582726	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	7.022957	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	4.60186	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	1.389563	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	1.69943	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	1.904893	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	2.868881	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	2.40336	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	2.271377	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	4.934093	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	2.020533	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	2.166634	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	2.409993	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	2.559237	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	4.417296	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	2.575991	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	3.042952	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	4.270537	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.489016		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.648126		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.603304		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	2.472345		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0.948901		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	2.710969		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.582392		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.150301		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.427975		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	1.950364	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.986503	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.895536	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	3.074247	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	5.045613	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	7.910197	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	6.582789	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	1.807153	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	5.172505	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	2.413389	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	2.527577	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	1.648802	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Apiaceae	Apium graveolens	8	Ag2G00390, Ag2G00678, Ag4G01254, Ag4G01631, Ag5G00389 ... Ag6G02923, Ag7G01967, Ag9G00611