Basic Information
Locus ID:
Ag2G00356
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 7932430 | 7935445 | - | Ag2G00356 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 37,465.86 Da | 58.93 | 78.30 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 283 | 320 | 1.6E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 270 | 330 | 4.8E-11 | IPR013083 |
| PIRSF | PIRSF036836 | SBP1_RNase_bind | 7 | 330 | 3.1E-92 | IPR017066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 284 | 319 | 10.143551 | IPR001841 |
| Coils | Coil | Coil | 185 | 219 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G45976.1 | S-ribonuclease binding protein 1. | 0 |
| RefSeq | XP_017248943.1 | PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 3 [Daucus carota subsp. sativus] | 0 |
| Q9LDD1 | Probable BOI-related E3 ubiquitin-protein ligase 3 OS=Arabidopsis thaliana OX=3702 GN=BRG3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A164ZP83 | BOI-related E3 ubiquitin-protein ligase 2 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_019443 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 87.790298 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 61.911003 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 102.124405 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 84.358543 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 76.18351 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 70.527893 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 65.104584 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 103.119499 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 43.374928 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 60.573406 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 43.233391 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 48.68774 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 42.503502 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 38.077892 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 23.532133 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 22.849171 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 28.823158 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 23.212797 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 25.745327 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 27.42856 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 28.130953 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 36.821018 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 38.57814 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 32.682323 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 35.641247 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 23.866369 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 25.853868 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 25.352034 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 28.523615 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 21.353151 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 17.71991 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 16.242239 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 40.335747 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 40.602249 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 36.287914 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 35.539146 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 23.616886 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 26.309589 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 19.486893 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 16.448061 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 12.425977 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 27.152454 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 26.553673 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 27.169239 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 41.191048 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 29.802834 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 34.243893 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 47.813396 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 45.285069 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 47.182159 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg10666, jg6246 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30045090 |
| Apiaceae | Apium graveolens | 1 | Ag2G00356 |
| Arecaceae | Cocos nucifera | 4 | COCNU_02G006760, COCNU_03G007820, scaffold001973G000010 ... |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103698873, gene-LOC103701819, gene-LOC103722891 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.1951.V1.1, AsparagusV1_07.2863.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G11986, Ftri2G13464 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G45976.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10011662m.g.v1.0 |
| Brassicaceae | Brassica nigra | 3 | BniB04g063880.2N, BniB06g023710.2N, BniB07g009720.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1824 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1965 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g02070, gene.Cymno02g02080 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate07g05040, gene.Thate08g03810 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5198 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.417 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00027603 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G20831 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.4257, BH01.4561, CH01.4867 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0242080, gene-QOZ80_3BG0286050 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0389860.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_069123 |
| Poaceae | Oryza coarctata | 2 | Oco05G008900, Oco06G009270 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g15730.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G408300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0102175, Pt_Chr0102196 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G030420, Chr04G007240, Chr07G004400, Chr12G009180 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G376600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG012200, gene_TRIDC4BG038230 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G089200.1, TraesCS4B02G215100.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb011620_P001, Zm00001eb398070_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-2159, nbis-gene-3817, nbis-gene-55954 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g1578, Zma_g3974 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g30720 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.743 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-19177 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20071 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6601 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.598 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010624 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8256 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10008 |
| Salicaceae | Populus euphratica | 1 | populus_peu31993 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627847 |
| Solanaceae | Solanum chilense | 1 | SOLCI007408100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018326 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.30927_chr11_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2539 |
| Zosteraceae | Zostera marina | 1 | Zosma01g15290.v3.1 |