Basic Information
Locus ID:
Ag2G00296
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Zinc ion binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 5895812 | 5907140 | + | Ag2G00296 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.34 | 92,940.53 Da | 41.56 | 68.42 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01457 | Leishmanolysin | 65 | 602 | 6.8E-86 | IPR001577 |
| Pfam | PF07974 | EGF-like domain | 643 | 670 | 4.4E-6 | IPR013111 |
| SUPERFAMILY | SSF63501 | Frizzled cysteine-rich domain | 760 | 815 | 1.57E-5 | IPR036790 |
| SUPERFAMILY | SSF55486 | "Metalloproteases (""zincins""), catalytic domain" | 119 | 607 | 8.56E-127 | - |
| Gene3D | G3DSA:3.90.132.10 | Leishmanolysin , domain 2 | 316 | 442 | 3.9E-35 | - |
| Gene3D | G3DSA:2.10.55.10 | Leishmanolysin domain 3 | 446 | 504 | 9.4E-12 | - |
| Gene3D | G3DSA:3.10.170.20 | - | 116 | 307 | 4.8E-34 | - |
| Gene3D | G3DSA:2.30.34.10 | Leishmanolysin domain 4 | 506 | 598 | 3.7E-9 | - |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 643 | 673 | 1.2E-7 | - |
| Gene3D | G3DSA:2.60.120.260 | - | 599 | 642 | 1.6E-6 | - |
| ProSiteProfiles | PS50026 | EGF-like domain profile. | 639 | 671 | 9.907964 | IPR000742 |
| ProSitePatterns | PS00022 | EGF-like domain signature 1. | 659 | 670 | - | IPR000742 |
| PRINTS | PR00782 | Leishmanolysin (M8) metalloprotease family signature | 405 | 434 | 8.3E-9 | IPR001577 |
| PRINTS | PR00782 | Leishmanolysin (M8) metalloprotease family signature | 252 | 281 | 8.3E-9 | IPR001577 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42620.1 | metalloendopeptidases;zinc ion binding. | 0 |
| RefSeq | XP_017253653.1 | PREDICTED: leishmanolysin-like peptidase [Daucus carota subsp. sativus] | 0 |
| Q29AK2 | Leishmanolysin-like peptidase OS=Drosophila pseudoobscura pseudoobscura OX=46245 GN=GA17800 PE=3 SV=1 | 0 | |
| TrEMBL | A0A164ZQR4 | EGF-like domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_019505 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 7.822056 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 10.785841 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 5.656709 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 7.246607 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 6.773366 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 3.082362 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 2.466998 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.049145 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 18.798744 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 18.717936 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 18.029535 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 28.374645 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 28.803185 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 29.573236 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 30.867474 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 34.065876 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 29.748098 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 43.354572 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 42.829826 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 21.135912 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 27.181583 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 22.311544 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 21.3032 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 19.020424 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 19.814659 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 37.603817 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 60.794781 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 24.60224 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 27.796234 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.961882 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.657644 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.927824 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 1.026382 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 5.989312 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.323606 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.388615 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.557195 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.240502 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 10.469884 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 6.732949 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 6.284691 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 1.600861 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 5.088124 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 18.179619 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 20.603674 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 1.637514 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 58.492485 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 11.960746 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 9.517638 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 10.132842 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg10621, jg11911, jg22839 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_747 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah037111 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g012970 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39414, Sbi_jg54923 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14914 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013977 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl13353, Sgl18568 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015049, gene:ENSEOMG00000035276 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0019910, CQ.Regalona.r1.1BG0006620 |
| Apiaceae | Apium graveolens | 3 | Ag2G00296, Ag3G00176, Ag4G02770 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G000330 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103707501 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.1520.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri10G04244, Ftri18G12673, Ftri9G12610 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G42620.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022547m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 4 | Sp2g07000.v2.2, SpUn0022_0010.v2.2, SpUn0026_0070.v2.2 ... |
| Brassicaceae | Brassica nigra | 1 | BniB02g060330.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1645 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1766 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno09g07290, gene.Cymno11g03340 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0225s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g05140 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.536 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026768 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G15822 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.715, BH01.862, CH01.871 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0217580, gene-QOZ80_3BG0262870 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0339720.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_062151, gene-QYE76_062163 |
| Poaceae | Oryza coarctata | 2 | Oco05G022660, Oco06G023520 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g52150.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G093200 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0107559, Pt_Chr0107562, Pt_Chr0107607, Pt_Ctg00228 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G006170, Chr04G027890, Chr07G026810, Chr12G031230 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G103300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG039670, gene_TRIDC4BG009590 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G253000.1, TraesCS4B02G062300.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb056220_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-14963, nbis-gene-16040 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g2874, Zma_g554 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.902, evm.TU.LG23.114 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g06410 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.545, evm.TU.Scaffold_8_RagTag.1064 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-19087, nbisL1-mrna-8995 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10311, nbisL1-mrna-8329 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-15424, nbisL1-mrna-21859 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000002l.539, evm.TU.utg000018l.354 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003786, Maker00011688 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-3030, nbisL1-mrna-5847, nbisL1-mrna-5849 |
| Rhizophoraceae | Rhizophora mangle | 6 | nbisL1-mrna-12473, nbisL1-mrna-12474, nbisL1-mrna-12476 ... |
| Salicaceae | Populus euphratica | 1 | populus_peu31918 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627962 |
| Solanaceae | Solanum chilense | 1 | SOLCI006502500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017811 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1932 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2296 |
| Zosteraceae | Zostera marina | 1 | Zosma01g01150.v3.1 |