Basic Information
Locus ID:
Ag2G00283
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
membrane protein At1g75140-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 5664668 | 5666764 | + | Ag2G00283 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.07 | 58,622.73 Da | 39.11 | 84.45 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 40 | 319 | 1.15E-10 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 8 | 181 | 1.9E-9 | IPR015943 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 424 | 497 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 474 | 496 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 424 | 454 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G75140.1 | 0 | |
| RefSeq | XP_017248753.1 | PREDICTED: uncharacterized membrane protein At1g75140 [Daucus carota subsp. sativus] | 0 |
| Q9FRK5 | Uncharacterized membrane protein At1g75140 OS=Arabidopsis thaliana OX=3702 GN=At1g75140 PE=1 SV=3 | 0 | |
| TrEMBL | A0A162A4Y7 | WD_REPEATS_REGION domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_019524 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 9.034875 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 10.72536 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 10.86946 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 11.096487 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 13.237858 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 11.934292 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 9.578814 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 7.903774 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 17.530857 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 18.432436 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 24.435137 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 19.039364 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 20.510509 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 17.415318 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 10.647531 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 9.439468 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 12.677965 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 9.672819 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 7.169724 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 7.530637 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 10.093946 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 9.388887 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 12.630587 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 9.232196 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 9.113894 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 12.857443 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 11.062174 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 9.765209 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 12.352438 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 15.237681 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 15.509035 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 11.800237 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 11.468763 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 12.68528 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 12.29096 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 13.869167 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 12.76903 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 12.407157 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 16.966825 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 14.409239 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 11.536605 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 5.502248 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 9.254229 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 20.301455 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 18.956938 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 8.435293 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 13.219383 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 11.97149 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 9.946467 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 14.399612 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg18750, jg25871 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25336 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah018145, Ah022557 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g202300 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg14664, Sbi_jg55428 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25989 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012472 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000040131 |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.2AG0008140, CQ.Regalona.r1.9AG0000160 ... |
| Apiaceae | Apium graveolens | 2 | Ag11G03121, Ag2G00283 |
| Arecaceae | Cocos nucifera | 3 | COCNU_08G005620, COCNU_09G000640, COCNU_10G009600 |
| Arecaceae | Phoenix dactylifera | 5 | gene-LOC103695932, gene-LOC103696485, gene-LOC103697671 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.93.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G09480 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G19370.1, AT1G75140.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10009294m.g.v1.0, Thhalv10018268m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g17280.v2.2, Sp5g30270.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g033980.2N, BniB06g048420.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1615 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1741 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0052s00013.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g22870 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1314 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.555 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00022122 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.98, BH06.104, CH06.96 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0506510, gene-QOZ80_6BG0458910 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0640570.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_027601 |
| Poaceae | Oryza coarctata | 2 | Oco11G000810, Oco12G000690 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g02480.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G011900 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr10G000370, Chr11G024380, Chr22G006060 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G093400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG065860, gene_TRIDC7AG004560 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G444200.1.cds1, TraesCS7A02G043600.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb269050_P001 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-40253, nbis-gene-41959, nbis-gene-41963 ... |
| Poaceae | Zoysia macrostachya | 2 | Zma_g29000, Zma_g31241 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2334, evm.TU.LG23.567 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g20150, gene.Posoc07g01710 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.1069 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-9004 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16436 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15427 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000018l.148 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17913 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20256 |
| Salicaceae | Populus euphratica | 3 | populus_peu07963, populus_peu14568, populus_peu30708 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627997 |
| Solanaceae | Solanum chilense | 1 | SOLCI001545500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015545 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.31635_chr11_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2242 |