halophFGD

Basic Information

Locus ID: Ag2G00276

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the GPI family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2	5490088	5500577	-	Ag2G00276

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.04	62,543.86 Da	33.53	90.97	-0.07

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd05016	SIS_PGI_2	336	522	1.09841E-69	IPR035482
CDD	cd05015	SIS_PGI_1	120	288	6.60679E-68	IPR035476
Pfam	PF00342	Phosphoglucose isomerase	51	545	6.9E-218	IPR001672
SUPERFAMILY	SSF53697	SIS domain	8	552	3.06E-180	-
Gene3D	G3DSA:1.10.1390.10	-	509	553	2.0E-16	IPR023096
Gene3D	G3DSA:3.40.50.10490	-	97	296	3.2E-208	-
Gene3D	G3DSA:3.40.50.10490	-	13	508	3.2E-208	-
ProSiteProfiles	PS51463	Glucose-6-phosphate isomerase family profile.	10	552	124.457504	IPR001672
ProSitePatterns	PS00765	Phosphoglucose isomerase signature 1.	269	282	-	IPR018189
ProSitePatterns	PS00174	Phosphoglucose isomerase signature 2.	499	516	-	IPR018189
PRINTS	PR00662	Glucose-6-phosphate isomerase signature	265	283	2.6E-65	IPR001672
PRINTS	PR00662	Glucose-6-phosphate isomerase signature	485	499	2.6E-65	IPR001672
PRINTS	PR00662	Glucose-6-phosphate isomerase signature	467	485	2.6E-65	IPR001672
PRINTS	PR00662	Glucose-6-phosphate isomerase signature	149	168	2.6E-65	IPR001672
PRINTS	PR00662	Glucose-6-phosphate isomerase signature	499	512	2.6E-65	IPR001672
PRINTS	PR00662	Glucose-6-phosphate isomerase signature	343	364	2.6E-65	IPR001672
Hamap	MF_00473	Glucose-6-phosphate isomerase [pgi].	45	526	36.860855	IPR001672

Gene Ontology

Biological Process:

GO:0006094 (gluconeogenesis) GO:0006096 (glycolytic process)

Molecular Function:

GO:0004347 (glucose-6-phosphate isomerase activity)

KEGG Pathway

KO Term:

K01810 (glucose-6-phosphate isomerase [EC:5.3.1.9])

Pathway:

ko00010 (Glycolysis / Gluconeogenesis) map00010 (Glycolysis / Gluconeogenesis) ko00030 (Pentose phosphate pathway) map00030 (Pentose phosphate pathway) ko00500 (Starch and sucrose metabolism) map00500 (Starch and sucrose metabolism) ko00520 (Amino sugar and nucleotide sugar metabolism) map00520 (Amino sugar and nucleotide sugar metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites) ko01120 (Microbial metabolism in diverse environments) map01120 (Microbial metabolism in diverse environments) ko01200 (Carbon metabolism) map01200 (Carbon metabolism)

Module:

M00001 (Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate) M00004 (Pentose phosphate pathway (Pentose phosphate cycle)) M00114 (Ascorbate biosynthesis, plants, fructose-6P => ascorbate)

Reaction:

R02739 (alpha-D-Glucose 6-phosphate <=> beta-D-Glucose 6-phosphate) R02740 (alpha-D-Glucose 6-phosphate <=> beta-D-Fructose 6-phosphate) R03321 (beta-D-Glucose 6-phosphate <=> beta-D-Fructose 6-phosphate)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G42740.1	Sugar isomerase (SIS) family protein.
RefSeq	XP_017258263.1	PREDICTED: glucose-6-phosphate isomerase, cytosolic 2B [Daucus carota subsp. sativus]
Swiss-Prot	O82059	Glucose-6-phosphate isomerase, cytosolic OS=Spinacia oleracea OX=3562 GN=PGIC PE=2 SV=2
TrEMBL	A0A1Q1NKW2	Glucose-6-phosphate isomerase OS=Daucus carota OX=4039 PE=2 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	13.709463	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	15.521163	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	8.462918	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	10.572921	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	10.661196	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	3.958631	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	3.963366	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	2.730145	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	11.227868	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	10.5069	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	8.318435	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	12.701011	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	14.147536	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	12.287827	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	3.097407	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	5.412679	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	6.198899	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	9.565303	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	6.55293	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	9.605208	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	12.187372	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	16.398554	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	19.686579	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	17.429825	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	13.071851	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	13.111648	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	13.902168	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	7.561779	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	8.310046	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	2.500061		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	1.71717		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	2.548556		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	8.142629		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	8.750499		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	7.079714		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	2.826927		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	1.757361		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	1.587035		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	5.549836	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	2.758813	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	1.301555	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	33.428814	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	8.252678	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	10.399016	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	7.346349	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	35.228901	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	7.413128	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	9.717185	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	14.272583	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	8.609303	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg11886, jg22864
Aizoaceae	Mesembryanthemum crystallinum	1	gene_2202
Amaranthaceae	Atriplex hortensis	1	Ah004679
Amaranthaceae	Beta vulgaris	1	BVRB_5g108180
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg24322, Sbi_jg8157
Amaranthaceae	Salicornia europaea	1	Seu_jg11865
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00001735
Amaranthaceae	Suaeda glauca	3	Sgl52462, Sgl52516, Sgl57752
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000005409, gene:ENSEOMG00000023744 ... gene:ENSEOMG00000024156
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.5AG0000960, CQ.Regalona.r1.5BG0001090
Anacardiaceae	Pistacia vera	1	pistato.v30046360
Apiaceae	Apium graveolens	2	Ag11G03127, Ag2G00276
Arecaceae	Cocos nucifera	1	COCNU_06G019190
Arecaceae	Phoenix dactylifera	1	gene-LOC103702710
Asparagaceae	Asparagus officinalis	1	AsparagusV1_03.683.V1.1
Asteraceae	Flaveria trinervia	2	Ftri18G17854, Ftri1G16548
Brassicaceae	Arabidopsis thaliana	1	AT5G42740.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10003173m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp2g07360.v2.2
Brassicaceae	Brassica nigra	1	BniB04g018160.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq03G1608
Casuarinaceae	Casuarina glauca	1	Cgl03G1734
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno06g01360
Dunaliellaceae	Dunaliella salina	1	Dusal.0233s00003.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate02g32110
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-8870
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG06.564
Plantaginaceae	Plantago ovata	2	Pov_00003297, Pov_00013794
Plumbaginaceae	Limonium bicolor	1	Lb4G23829
Poaceae	Echinochloa crus-galli	3	AH01.80, BH01.560, CH01.538
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_3AG0214010, gene-QOZ80_3BG0259130
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.1HG0007200.1
Poaceae	Lolium multiflorum	2	gene-QYE76_008682, gene-QYE76_014907
Poaceae	Oryza coarctata	2	Oco06G025890, Oco11G006770
Poaceae	Oryza sativa	2	LOC_Os03g56460.1, LOC_Os06g14510.3
Poaceae	Paspalum vaginatum	1	gene-BS78_01G063400
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0502189, Pt_Chr0503684
Poaceae	Sporobolus alterniflorus	3	Chr04G029760, Chr07G028830, Chr12G036100
Poaceae	Thinopyrum elongatum	1	Tel1E01G086400
Poaceae	Triticum dicoccoides	2	gene_TRIDC1AG004660, gene_TRIDC1BG006510
Poaceae	Triticum aestivum	3	TraesCS1A02G040600.1, TraesCS1B02G053600.1 ... TraesCS1D02G041200.1
Poaceae	Zea mays	1	Zm00001eb059230_P001
Poaceae	Zoysia japonica	2	nbis-gene-15226, nbis-gene-16346
Poaceae	Zoysia macrostachya	2	Zma_g2658, Zma_g369
Portulacaceae	Portulaca oleracea	3	evm.TU.LG10.563, evm.TU.LG17.574, evm.TU.LG20.1332
Posidoniaceae	Posidonia oceanica	1	gene.Posoc03g26440
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_7_RagTag.571
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-19058
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-1825
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-21835
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000002l.560
Rhizophoraceae	Kandelia obovata	1	Maker00012018
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-5869
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-12503
Salicaceae	Populus euphratica	3	populus_peu02280, populus_peu07049, populus_peu07985
Solanaceae	Lycium barbarum	1	gene-LOC132618765
Solanaceae	Solanum chilense	1	SOLCI004276300
Solanaceae	Solanum pennellii	1	gene-LOC107007136
Tamaricaceae	Reaumuria soongarica	1	gene_15283
Tamaricaceae	Tamarix chinensis	1	TC09G1332
Zosteraceae	Zostera marina	1	Zosma06g02560.v3.1