Basic Information
Locus ID:
Ag2G00269
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 5380062 | 5385402 | - | Ag2G00269 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 83,348.37 Da | 39.69 | 90.44 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 534 | 558 | 0.95 | IPR002885 |
| Pfam | PF13812 | Pentatricopeptide repeat domain | 381 | 434 | 2.6E-8 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 568 | 594 | 0.64 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 600 | 628 | 0.056 | IPR002885 |
| Pfam | PF13812 | Pentatricopeptide repeat domain | 447 | 499 | 4.7E-7 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 329 | 471 | 3.6E-24 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 508 | 725 | 2.9E-22 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 391 | 423 | 2.9E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 425 | 458 | 1.0E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 460 | 493 | 1.5E-4 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 597 | 631 | 8.593717 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 562 | 596 | 8.747175 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 387 | 421 | 11.366925 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 457 | 491 | 10.380408 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 422 | 456 | 10.972319 | IPR002885 |
| Coils | Coil | Coil | 397 | 417 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19520.1 | pentatricopeptide (PPR) repeat-containing protein. | 0 |
| RefSeq | XP_017252575.1 | PREDICTED: uncharacterized protein LOC108223038 [Daucus carota subsp. sativus] | 0 |
| Q8LEZ4 | Small ribosomal subunit protein mS77 (rPPR2) OS=Arabidopsis thaliana OX=3702 GN=NFD5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A2YEE4 | Protein NUCLEAR FUSION DEFECTIVE 5 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111745pilonHSYRG00017 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 30.457317 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 20.428577 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 18.214569 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 17.845869 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 20.31987 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 16.105289 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 18.50602 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 11.804523 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 35.931309 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 33.775112 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 42.271652 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 44.080025 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 38.126736 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 34.418026 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 10.969142 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 15.318781 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 14.300416 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 14.77747 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 10.452651 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 12.556741 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 16.772623 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 14.522918 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 14.436279 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 14.485156 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 17.038465 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 17.896336 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 17.432669 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 16.452358 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 19.499331 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 7.477328 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 10.193894 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 9.438904 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 10.4199 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 14.540351 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 10.649676 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 10.65225 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 4.893101 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 6.932384 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 17.233223 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 9.140047 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 5.935185 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 9.469206 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 8.841983 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 35.03698 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 23.069742 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 12.283372 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 26.113249 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 20.563684 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 18.763975 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 19.942789 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg22884 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9792 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014084 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g084340 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg20801, Sbi_jg22962 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16834 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009317 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl62012, Sgl66572 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000018675, gene:ENSEOMG00000019992 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2BG0012480, CQ.Regalona.r1.7AG0012690 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30046570 |
| Apiaceae | Apium graveolens | 1 | Ag2G00269 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G010280 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103703729 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.869.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri2G24160 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G19520.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006936m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g17390.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g034270.2N, BniB06g017100.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1586 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1712 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g15730 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g33430 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.332 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00002818, Pov_00013644 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb0G37539, Lb5G27091 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.2571, BH07.2376, CH07.2453 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0137150, gene-QOZ80_2BG0192760 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0593640.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_023560 |
| Poaceae | Oryza coarctata | 2 | Oco03G015100, Oco04G015580 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g39820.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G193400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0204565, Pt_Chr0204621 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G026090, Chr13G007790 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G424900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG034000, gene_TRIDC6BG040540 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G219800.1, TraesCS6B02G249200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb246850_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-18560 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g16652 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG06.1376, evm.TU.LG11.752, evm.TU.LG11.761 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g35250 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.1934 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14392, nbisL1-mrna-9026 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4183 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21638 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000027l.79 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017450 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3015 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20277 |
| Salicaceae | Populus euphratica | 2 | populus_peu15228, populus_peu32890 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132616750 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107026201, gene-LOC107026235 |
| Tamaricaceae | Reaumuria soongarica | 2 | MSTRG.20642_chr11_-, STRG.14308_chr08_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2192 |
| Zosteraceae | Zostera marina | 1 | Zosma03g13290.v3.1 |