halophFGD

Basic Information

Locus ID: Ag2G00242

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: ubiquitin binding

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2	4033508	4034180	+	Ag2G00242

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.72	14,706.45 Da	37.48	105.41	-0.20

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00564	PB1 domain	30	82	8.1E-6	IPR000270
SUPERFAMILY	SSF54277	CAD & PB1 domains	22	81	3.19E-10	-
Gene3D	G3DSA:3.10.20.90	-	13	83	1.2E-10	-
MobiDBLite	mobidb-lite	consensus disorder prediction	85	107	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K17987 (next to BRCA1 gene 1 protein)

Pathway:

ko04137 (Mitophagy - animal) map04137 (Mitophagy - animal)

Best hit

Source	Best Hit ID	Description
RefSeq	XP_017218784.1	PREDICTED: protein NBR1 homolog isoform X2 [Daucus carota subsp. sativus]
Swiss-Prot	M1BJF6	Protein JOKA2 OS=Solanum tuberosum OX=4113 GN=JOKA2 PE=1 SV=1
TrEMBL	A0A164UMR4	Protein NBR1 homolog OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_026172 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.200517	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.083545	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0.171936	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg13016, jg25928, jg27525
Aizoaceae	Mesembryanthemum crystallinum	1	gene_13626
Amaranthaceae	Atriplex hortensis	1	Ah000528
Amaranthaceae	Beta vulgaris	1	BVRB_5g118120
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg30623, Sbi_jg58642
Amaranthaceae	Salicornia europaea	1	Seu_jg28506
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00014870
Amaranthaceae	Suaeda glauca	2	Sgl55137, Sgl60389
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000007680, gene:ENSEOMG00000023923 ... gene:ENSEOMG00000024177
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.5AG0023620, CQ.Regalona.r1.5BG0025110
Anacardiaceae	Pistacia vera	2	pistato.v30139930, pistato.v30141380
Apiaceae	Apium graveolens	6	Ag10G00126, Ag2G00242, Ag4G00254, Ag4G00255, Ag5G00713 ... Ag9G00572
Arecaceae	Cocos nucifera	2	COCNU_02G013810, scaffold005094G000020
Arecaceae	Phoenix dactylifera	2	gene-LOC103697200, gene-LOC103712004
Asparagaceae	Asparagus officinalis	2	AsparagusV1_09.1668.V1.1, AsparagusV1_09.1669.V1.1
Asteraceae	Flaveria trinervia	2	Ftri18G08727, Ftri1G31289
Brassicaceae	Arabidopsis thaliana	1	AT4G24690.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10024557m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp7g22680.v2.2
Brassicaceae	Brassica nigra	3	BniB02g081320.2N, BniB03g012990.2N, BniB05g012530.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq01G1898
Casuarinaceae	Casuarina glauca	1	Cgl01G2066
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno08g00880
Dunaliellaceae	Dunaliella salina	1	Dusal.0047s00011.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate04g22720, gene.Thate09g09360
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG10.666
Plantaginaceae	Plantago ovata	3	Pov_00022184, Pov_00022185, Pov_00033787
Plumbaginaceae	Limonium bicolor	2	Lb4G23184, Lb4G23185
Poaceae	Echinochloa crus-galli	6	AH01.4050, AH07.2435, BH07.2248, BH09.1477, CH07.2318 ... CH09.1580
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_2AG0136020, gene-QOZ80_2BG0191560 ... gene-QOZ80_4AG0313560, gene-QOZ80_4BG0344740
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.2HG0175440.1, HORVU.MOREX.r3.6HG0590780.1
Poaceae	Lolium multiflorum	2	gene-QYE76_023397, gene-QYE76_044603
Poaceae	Oryza coarctata	4	Oco03G014210, Oco04G014540, Oco07G008550, Oco08G008460
Poaceae	Oryza sativa	2	LOC_Os02g38050.1, LOC_Os04g40090.1
Poaceae	Paspalum vaginatum	2	gene-BS78_04G180800, gene-BS78_06G134100
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0204430, Pt_Chr0204491, Pt_Chr0302310, Pt_Chr0302358
Poaceae	Sporobolus alterniflorus	9	Chr06G008580, Chr09G012830, Chr12G013110, Chr13G008710 ... Chr15G010130, Chr23G010600, Chr25G009080, Chr29G007230, Chr30G008990
Poaceae	Thinopyrum elongatum	2	Tel2E01G586100, Tel6E01G409400
Poaceae	Triticum dicoccoides	4	gene_TRIDC2AG049050, gene_TRIDC2BG051620 ... gene_TRIDC6AG032260, gene_TRIDC6BG038490
Poaceae	Triticum aestivum	6	TraesCS2A02G327000.1, TraesCS2B02G355000.6 ... TraesCS2D02G335900.1, TraesCS6A02G208300.2, TraesCS6B02G236800.1, TraesCS6D02G191900.3
Poaceae	Zea mays	5	Zm00001eb079700_P001, Zm00001eb127620_P001 ... Zm00001eb245950_P002, Zm00001eb386690_P001, Zm00001eb386700_P001
Poaceae	Zoysia japonica	3	nbis-gene-18655, nbis-gene-29772, nbis-gene-36883
Poaceae	Zoysia macrostachya	3	Zma_g13801, Zma_g16598, Zma_g19915
Portulacaceae	Portulaca oleracea	2	evm.TU.LG01.2423, evm.TU.LG14.1589
Posidoniaceae	Posidonia oceanica	1	gene.Posoc05g02640
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_11_RagTag.1077, evm.TU.Scaffold_4_RagTag.432
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-14753, nbisL1-mrna-28928
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-6694, nbisL1-mrna-9528
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-12633, nbisL1-mrna-1896
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000008l.279, evm.TU.utg000010l.146
Rhizophoraceae	Kandelia obovata	2	Maker00001490, Maker00008965
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-14627, nbisL1-mrna-715
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-1425, nbisL1-mrna-8710
Salicaceae	Populus euphratica	3	populus_peu28711, populus_peu30137, populus_peu30139
Solanaceae	Lycium barbarum	3	gene-LOC132601682, gene-LOC132609562, gene-LOC132632592
Solanaceae	Solanum chilense	2	SOLCI005419300, SOLCI006063400
Solanaceae	Solanum pennellii	2	gene-LOC107014343, gene-LOC107023916
Tamaricaceae	Reaumuria soongarica	2	gene_11193, gene_15993
Tamaricaceae	Tamarix chinensis	2	TC08G2523, TC09G0955