Basic Information
Locus ID:
Ag2G00199
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
60s ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 3324252 | 3326790 | - | Ag2G00199 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.06 | 25,825.09 Da | 39.96 | 82.22 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13156 | KOW_RPL6 | 78 | 230 | 6.85103E-82 | IPR041997 |
| Pfam | PF01159 | Ribosomal protein L6e | 123 | 230 | 3.4E-37 | IPR000915 |
| Pfam | PF03868 | Ribosomal protein L6, N-terminal domain | 3 | 58 | 3.0E-17 | IPR005568 |
| SUPERFAMILY | SSF50104 | Translation proteins SH3-like domain | 84 | 176 | 1.46E-25 | IPR008991 |
| Gene3D | G3DSA:2.30.30.30 | - | 84 | 168 | 1.2E-16 | IPR014722 |
| ProSitePatterns | PS01170 | Ribosomal protein L6e signature. | 124 | 142 | - | IPR000915 |
| Coils | Coil | Coil | 159 | 179 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18540.1 | Ribosomal protein L6 family protein. | 0 |
| RefSeq | XP_017248902.1 | PREDICTED: 60S ribosomal protein L6-1-like [Daucus carota subsp. sativus] | 0 |
| Q9FZ76 | Large ribosomal subunit protein eL6z OS=Arabidopsis thaliana OX=3702 GN=RPL6A PE=2 SV=1 | 0 | |
| TrEMBL | A0A162A5N9 | 60S ribosomal protein L6 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_019794 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 146.682739 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 109.644867 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 77.011909 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 74.479385 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 84.278687 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 65.685684 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 54.562557 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 41.262894 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 141.359711 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 151.444656 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 146.397995 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 168.454391 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 145.970093 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 154.626434 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 100.763046 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 155.020889 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 140.281372 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 111.422714 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 119.603142 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 156.877304 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 124.117722 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 186.453354 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 196.584915 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 204.276657 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 180.397964 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 131.032516 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 129.958771 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 121.783638 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 150.190247 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 115.098846 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 156.589722 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 181.147781 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 56.953484 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 145.833755 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 69.409996 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 93.762863 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 88.793671 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 88.80175 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 136.587326 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 60.976135 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 33.358784 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 151.952072 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 95.442802 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 264.924103 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 142.788193 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 213.948029 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 98.669373 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 242.031738 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 194.565872 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 184.147156 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg12242, jg12244, jg23298, jg28247, jg6526 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4699 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah004858, Ah021576 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_3g060660, BVRB_6g146010 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg21795, Sbi_jg22023, Sbi_jg59225, Sbi_jg63403 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg15951, Seu_jg23487 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008570 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl02652, Sgl07810, Sgl63056, Sgl63063, Sgl67672 |
| Amaranthaceae | Chenopodium album | 9 | gene:ENSEOMG00000012494, gene:ENSEOMG00000016469 ... |
| Amaranthaceae | Chenopodium quinoa | 6 | CQ.Regalona.r1.2AG0015030, CQ.Regalona.r1.2AG0016670 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30013030 |
| Apiaceae | Apium graveolens | 3 | Ag10G03038, Ag2G00199, AgUnG00573 |
| Arecaceae | Cocos nucifera | 4 | COCNU_01G006940, COCNU_01G011870, COCNU_11G006990 ... |
| Arecaceae | Phoenix dactylifera | 5 | gene-LOC103702300, gene-LOC103705376, gene-LOC103711393 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.3336.V1.1, AsparagusV1_05.704.V1.1 |
| Asteraceae | Flaveria trinervia | 5 | Ftri11G03211, Ftri12G01443, Ftri12G03269, Ftri5G08022 ... |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G18540.1, AT1G74050.1, AT1G74060.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10008650m.g.v1.0, Thhalv10019079m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp1g16490.v2.2, Sp5g29290.v2.2, Sp6g12740.v2.2 ... |
| Brassicaceae | Brassica nigra | 6 | BniB03g007650.2N, BniB03g028080.2N, BniB03g038570.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq04G1131, Ceq05G0515 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G1299, Cgl05G0545 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g07690, gene.Cymno05g08250 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0521s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate07g20680, gene.Thate07g20700 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-6045 |
| Nitrariaceae | Nitraria sibirica | 4 | evm.TU.Contig6.8, evm.TU.LG03.24, evm.TU.LG03.37 ... |
| Plantaginaceae | Plantago ovata | 2 | Pov_00021915, Pov_00037625 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb1G08063, Lb5G28062, Lb6G30606, Lb7G34263 |
| Poaceae | Echinochloa crus-galli | 5 | AH01.4078, AH07.2416, BH09.1450, CH07.2300, CH09.1560 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0135850, gene-QOZ80_2BG0191380 ... |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_021837, gene-QYE76_023362, gene-QYE76_023376 ... |
| Poaceae | Oryza coarctata | 4 | Oco03G014020, Oco04G014410, Oco07G008390, Oco08G008290 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g37862.1, LOC_Os04g39700.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G179300, gene-BS78_06G131600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0204399, Pt_Chr0206381 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr06G008700, Chr09G012950, Chr13G008820, Chr15G010240 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G370600, Tel6E01G400800 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC6AG029710, gene_TRIDC6AG031340 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS6A02G204900.1, TraesCS6B02G225600.1 ... |
| Poaceae | Zea mays | 6 | Zm00001eb138180_P001, Zm00001eb183410_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-18668, nbis-gene-29786, nbis-gene-36866 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g13792, Zma_g16588, Zma_g19902, Zma_g21453 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG07.212, evm.TU.LG15.752, evm.TU.LG16.1313 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g17450, gene.Posoc03g10820 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_14_RagTag.487, evm.TU.Scaffold_14_RagTag.488 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-18925, nbisL1-mrna-9159 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-8149, nbisL1-mrna-8150 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-6950, nbisL1-mrna-6951, nbisL1-mrna-6952 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000028l.218 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010805 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16220, nbisL1-mrna-8817 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10624, nbisL1-mrna-20137 |
| Salicaceae | Populus euphratica | 3 | populus_peu01819, populus_peu26158, populus_peu35991 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132613906, gene-LOC132614049, gene-LOC132637123 |
| Solanaceae | Solanum chilense | 3 | SOLCI002105300, SOLCI002388900, SOLCI004727400 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107004885, gene-LOC107017663, gene-LOC107020772 |
| Tamaricaceae | Reaumuria soongarica | 4 | STRG.21794_chr08_-, STRG.4897_chr03_+, STRG.7323_chr04_- ... |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G1442, TC05G1972 |
| Zosteraceae | Zostera marina | 1 | Zosma04g16030.v3.1 |