Basic Information
Locus ID:
Ag2G00188
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Ring finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 3200009 | 3204426 | + | Ag2G00188 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 39,383.29 Da | 43.79 | 81.56 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13181 | Tetratricopeptide repeat | 249 | 278 | 0.056 | IPR019734 |
| SUPERFAMILY | SSF48452 | TPR-like | 167 | 329 | 3.5E-9 | IPR011990 |
| SUPERFAMILY | SSF57850 | RING/U-box | 59 | 105 | 3.06E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 60 | 142 | 2.9E-9 | IPR013083 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 158 | 352 | 1.8E-12 | IPR011990 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 64 | 98 | 11.191014 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 80 | 89 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 38 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54360.1 | zinc ion binding. | 0 |
| RefSeq | XP_017252871.1 | PREDICTED: uncharacterized protein LOC108223234 [Daucus carota subsp. sativus] | 0 |
| Q9M2V1 | Protein NCA1 OS=Arabidopsis thaliana OX=3702 GN=NCA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A164ZWW5 | RING-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_019783 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 68.341469 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 59.885372 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 64.068634 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 60.968285 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 60.633446 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 65.523483 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 59.543236 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 47.900368 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 86.471733 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 76.704147 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 78.398186 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 68.306152 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 82.042076 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 70.158844 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 56.095158 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 67.624992 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 60.793854 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 119.250549 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 116.485245 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 125.437004 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 136.889709 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 68.913727 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 60.987366 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 76.717255 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 75.301857 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 112.614662 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 104.623322 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 112.031586 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 89.950317 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 93.381493 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 102.923828 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 81.388702 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 159.6996 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 94.189781 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 133.527054 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 113.615524 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 103.45829 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 112.409409 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 78.041649 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 104.802063 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 120.946861 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 133.637421 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 121.458534 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 130.550095 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 132.425385 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 140.247589 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 119.507027 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 68.820679 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 64.776993 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 65.672272 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg15973, jg31284 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7107 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah006802, Ah006804 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g209770 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12040, Sbi_jg46961 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21253 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009593 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl80448, Sgl82909 |
| Amaranthaceae | Chenopodium album | 7 | gene:ENSEOMG00000008611, gene:ENSEOMG00000028892 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0014210, CQ.Regalona.r1.4AG0014280 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30168710 |
| Apiaceae | Apium graveolens | 1 | Ag2G00188 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G011990, COCNU_16G005190 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103702200, gene-LOC103709685 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.781.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G21364, Ftri12G03745 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G54360.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010421m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g08040.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g057400.2N, BniB08g068610.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0959 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0957 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g12190 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0024s00045.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g18080, gene.Thate08g13470 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8184 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2075 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00006872 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G12533, Lb2G12552 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.1089, AH04.338, BH02.1023, BH04.333, CH02.1131 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0006300, gene-QOZ80_1BG0055020 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0231430.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_049152, gene-QYE76_049638 |
| Poaceae | Oryza coarctata | 2 | Oco01G000230, Oco02G000230 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g01420.2, LOC_Os02g55200.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G095600, gene-BS78_05G057500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0206639, Pt_Chr0206742 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr02G025520, Chr03G002610, Chr05G003250, Chr08G002460 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G142900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG009360, gene_TRIDC3BG013200 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G078500.1, TraesCS3B02G093400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb126920_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-32362, nbis-gene-7207 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9799 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.652, evm.TU.LG09.1814 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc08g12580, gene.Posoc10g11460 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.133 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-7226 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2367 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-14452 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000005l.310 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010292 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-283 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21996 |
| Salicaceae | Populus euphratica | 2 | populus_peu04167, populus_peu34998 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132607379, gene-LOC132637098 |
| Solanaceae | Solanum chilense | 1 | SOLCI002815000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002385 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13021 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G2437, TC06G0704 |
| Zosteraceae | Zostera marina | 1 | Zosma06g24400.v3.1 |