halophFGD

Basic Information

Locus ID: Ag2G00184

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Short Name: CBL10

Description: Calcineurin B-like protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2	3180067	3180438	-	Ag2G00184

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.04	14,496.74 Da	50.84	84.72	-0.25

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	15	49	6.4E-8	IPR001810
SUPERFAMILY	SSF81383	F-box domain	11	74	3.27E-15	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	7	80	1.3E-9	-
SMART	SM00256	fbox_2	15	54	4.6E-7	IPR001810
ProSiteProfiles	PS50181	F-box domain profile.	9	54	9.603447	IPR001810

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K06268 (serine/threonine-protein phosphatase 2B regulatory subunit)

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) ko04020 (Calcium signaling pathway) map04020 (Calcium signaling pathway) ko04022 (cGMP-PKG signaling pathway) map04022 (cGMP-PKG signaling pathway) ko04114 (Oocyte meiosis) map04114 (Oocyte meiosis) ko04218 (Cellular senescence) map04218 (Cellular senescence) ko04310 (Wnt signaling pathway) map04310 (Wnt signaling pathway) ko04370 (VEGF signaling pathway) map04370 (VEGF signaling pathway) map04650 (Natural killer cell mediated cytotoxicity) map04658 (Th1 and Th2 cell differentiation) map04659 (Th17 cell differentiation) map04660 (T cell receptor signaling pathway) map04662 (B cell receptor signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G41473.1	F-box family protein.
RefSeq	XP_022882234.1	putative F-box protein At5g50220 [Olea europaea var. sylvestris]
TrEMBL	A0A8S0V571	F-box At3g17265 isoform X2 OS=Olea europaea subsp. europaea OX=158383 GN=OLEA9_A010812 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.903403	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	2.235823	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.516202	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	1.110148	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	1.932837	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	2.606896	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.533324	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.833774	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	3.691214	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	2.834737	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	2.268728	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	3.7356	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	3.6235	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	2.713487	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0.191502	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.436326	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.129078	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.133461	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	2.00632		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	3.654276		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	5.245538		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	1.654599		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	1.090589		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	1.917465		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	1.012027		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.585682		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.187436		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	2.592115	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	2.170796	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.154625	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.627576	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.213316	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.338904	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.190217	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	2.620842	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	1.580589	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	1.396125	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg21930, jg21931
Apiaceae	Apium graveolens	5	Ag2G00184, Ag4G00712, Ag5G00094, Ag6G00932, Ag6G00934
Plantaginaceae	Plantago ovata	6	Pov_00005860, Pov_00005862, Pov_00005863, Pov_00005864 ... Pov_00005865, Pov_00038996
Poaceae	Echinochloa crus-galli	1	AH05.4160
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_17_RagTag.746, evm.TU.Scaffold_17_RagTag.806
Rhizophoraceae	Carallia pectinifolia	11	nbisL1-mrna-22820, nbisL1-mrna-22893, nbisL1-mrna-23439 ... nbisL1-mrna-23441, nbisL1-mrna-23442, nbisL1-mrna-23449, nbisL1-mrna-23485, nbisL1-mrna-23509, nbisL1-mrna-23510, nbisL1-mrna-25541, nbisL1-mrna-9317
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-20068
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000013l.404
Rhizophoraceae	Kandelia obovata	2	Maker00004309, Maker00004369
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-21034, nbisL1-mrna-21035, nbisL1-mrna-21043
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-14243, nbisL1-mrna-14263
Solanaceae	Lycium barbarum	1	gene-LOC132599182
Solanaceae	Solanum chilense	2	SOLCI001944300, SOLCI007333400
Solanaceae	Solanum pennellii	1	gene-LOC114075087