halophFGD

Basic Information

Locus ID: Ag2G00183

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: F-box-like

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2	3179365	3180054	-	Ag2G00183

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.20	26,896.15 Da	52.31	89.26	-0.25

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF08268	F-box associated domain	87	159	6.0E-7	IPR013187
Coils	Coil	Coil	219	229	-	-

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_017222320.1	PREDICTED: uncharacterized protein LOC108199075 [Daucus carota subsp. sativus]	0
TrEMBL	A0A175YLT8	FBA_3 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_028233 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.405102	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	2.35225	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	1.458898	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	2.155895	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	2.079519	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	4.57946	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	1.326794	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	3.039142	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	3.012497	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	2.871094	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	2.648317	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	3.82485	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	4.840132	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	3.000031	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.25916	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0.252925	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.567717	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.106505	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.103417	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.061443	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.838286	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.304575	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.352994	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.136004	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	4.437493		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	7.827331		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	9.319086		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	1.986827		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	1.729608		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	1.756069		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	2.134553		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.771355		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.586104		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	3.677772	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	2.063365	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.37023	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.218154	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.126654	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.896282	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.871789	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.275203	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.884261	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	2.557169	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	1.927118	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	2.116095	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Apiaceae	Apium graveolens	9	Ag10G02420, Ag10G02939, Ag11G04165, Ag11G04166, Ag2G00168 ... Ag2G00183, Ag2G00667, Ag4G00711, Ag8G00465