Basic Information
Locus ID:
Ag2G00129
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Broad-Complex, Tramtrack and Bric a brac
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 1631575 | 1635893 | - | Ag2G00129 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.09 | 64,455.93 Da | 51.00 | 87.45 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18186 | BTB_POZ_ZBTB_KLHL-like | 332 | 423 | 4.76939E-21 | - |
| CDD | cd14733 | BACK | 449 | 487 | 0.00157778 | - |
| Pfam | PF00651 | BTB/POZ domain | 330 | 436 | 6.0E-15 | IPR000210 |
| Pfam | PF00651 | BTB/POZ domain | 161 | 258 | 1.5E-17 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 328 | 439 | 5.89E-20 | IPR011333 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 30 | 106 | 6.78E-13 | IPR036770 |
| SUPERFAMILY | SSF54695 | POZ domain | 160 | 256 | 1.1E-18 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 325 | 482 | 7.7E-27 | IPR011333 |
| Gene3D | G3DSA:1.25.40.20 | - | 21 | 114 | 1.1E-13 | IPR036770 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 157 | 256 | 4.6E-20 | IPR011333 |
| SMART | SM00225 | BTB_4 | 162 | 259 | 1.0E-13 | IPR000210 |
| SMART | SM00225 | BTB_4 | 333 | 440 | 5.2E-14 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 162 | 229 | 17.686155 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 333 | 409 | 14.190897 | IPR000210 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G04740.1 | ankyrin repeat family protein. | 0 |
| RefSeq | XP_017254201.1 | PREDICTED: BTB/POZ domain-containing protein At2g04740 [Daucus carota subsp. sativus] | 0 |
| Q9SJ85 | BTB/POZ domain-containing protein At2g04740 OS=Arabidopsis thaliana OX=3702 GN=At2g04740 PE=2 SV=2 | 0 | |
| TrEMBL | A0A164ZVQ2 | BTB/POZ domain-containing protein At2g04740 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_019721 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 23.289938 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 18.474812 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 20.420607 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 17.839357 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 20.239132 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 19.666231 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 17.895685 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 16.893867 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 23.692541 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 30.629206 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 31.259542 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 30.154516 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 32.584518 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 27.916376 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 5.547169 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 7.212999 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 11.118693 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 8.911909 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 9.34171 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 7.141519 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 11.041503 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 14.662798 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 16.07597 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 12.044985 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 13.312716 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 15.142696 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 11.61116 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 11.252288 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 10.912631 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 7.374271 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 10.736999 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 8.256523 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 9.715192 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 10.476834 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 9.216088 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 6.289494 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 5.429969 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 5.399552 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 10.954109 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 9.436812 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 7.734935 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 12.560348 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 11.305526 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 17.505455 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 15.491611 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 15.977869 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 13.653134 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 20.572994 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 22.885288 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 23.554724 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg19096 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25494 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah038267 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg14615, Sbi_jg53753, Sbi_jg53755 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg10415 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012700 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl78250, Sgl80745 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014973, gene:ENSEOMG00000037275 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0002510, CQ.Regalona.r1.9BG0020010 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30017560 |
| Apiaceae | Apium graveolens | 1 | Ag2G00129 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G012400 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103697422 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2088.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri4G28600 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G04740.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10002462m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g23370.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g010520.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2308 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2398 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g05260 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g18970 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.2180 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00031939 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb6G31612, Lb6G31615 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.1292, BH06.1336, CH06.1480 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0519000, gene-QOZ80_6BG0471100 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0675160.1 |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_009276, gene-QYE76_009277, gene-QYE76_029568 ... |
| Poaceae | Oryza coarctata | 2 | Oco11G008180, Oco12G008200 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g21330.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G131400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0104570, Pt_Chr0105680 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G001670, Chr11G016880 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G410300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG028660, gene_TRIDC7BG019850 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G224500.3, TraesCS7B02G191100.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb281240_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-28955 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g29594 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG02.2225, evm.TU.LG02.2226, evm.TU.LG23.457 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g09980 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.1412 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-20350, nbisL1-mrna-20554 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1967 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21404 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.883 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009591 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13877 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4661 |
| Salicaceae | Populus euphratica | 1 | populus_peu26935 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132617413 |
| Solanaceae | Solanum chilense | 1 | SOLCI001173700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107024329 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_159 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G0229 |