Basic Information
Locus ID:
Ag2G00120
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Nuclear protein Es2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 1562181 | 1564036 | + | Ag2G00120 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.75 | 56,727.17 Da | 51.28 | 65.48 | -0.91 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF09751 | Nuclear protein Es2 | 45 | 451 | 4.1E-94 | IPR019148 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 397 | 511 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 404 | 424 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 489 | 505 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 48 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 7 | 43 | - | - |
| Coils | Coil | Coil | 257 | 277 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G07790.1 | DGCR14-related. | 0 |
| RefSeq | XP_017253099.1 | PREDICTED: protein DGCR14 [Daucus carota subsp. sativus] | 0 |
| Q96DF8 | Splicing factor ESS-2 homolog OS=Homo sapiens OX=9606 GN=ESS2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A162A7A0 | Protein DGCR14 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_019712 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 34.432037 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 28.130041 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 35.590816 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 36.425308 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 32.357838 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 52.283787 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 38.764889 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 43.917233 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 40.114788 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 45.017254 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 44.324833 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 45.780331 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 41.527828 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 43.08144 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 19.69626 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 22.310991 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 22.623238 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 21.331276 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 18.750544 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 20.041348 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 22.818136 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 28.753534 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 36.15168 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 29.368019 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 30.805965 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 25.615889 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 19.506714 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 21.286953 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 29.05439 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 43.530323 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 29.173466 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 35.187141 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 48.082069 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 37.56028 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 45.485035 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 45.126179 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 62.346706 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 53.412712 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 34.636234 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 22.336674 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 14.806529 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 42.394291 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 58.124435 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 54.884228 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 61.971142 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 37.272266 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 41.792545 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 37.075382 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 38.837009 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 38.154167 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg19087 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25545 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah038201 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg14643, Sbi_jg53932 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg10477, Seu_jg3650 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012726 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl78289, Sgl80785 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000017992, gene:ENSEOMG00000038964 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0002740, CQ.Regalona.r1.9BG0019730 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30017370 |
| Apiaceae | Apium graveolens | 1 | Ag2G00120 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G003500 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103711995 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.1421.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G27576 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G07790.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022183m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g06720.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g056180.2N, BniB07g058880.2N |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno12g02200 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0137s00003.v1.0, Dusal.0137s00005.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g15680 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.2217 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00031831 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.1743, BH06.1640, CH06.1812 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0530550, gene-QOZ80_6BG0484330 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0710760.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_033963 |
| Poaceae | Oryza coarctata | 2 | Oco11G009920, Oco12G009900 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g30710.3 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G141700 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0400087 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr14G011710, Chr21G011640 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G579900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG047810, gene_TRIDC7BG039630 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G342100.1, TraesCS7B02G240700.1.cds1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb209420_P001, Zm00001eb209430_P002 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-35437 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32309 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG16.1105, evm.TU.LG20.1431 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc05g22820, gene.Posoc09g07920 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_5_RagTag.1607, evm.TU.Scaffold_9_RagTag.1430 ... |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-12094 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1244 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-10908, nbisL1-mrna-21426 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000003l.351, add.evm.TU.utg000006l.397 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013303 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-20872, nbisL1-mrna-22356 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-15543, nbisL1-mrna-4646 |
| Salicaceae | Populus euphratica | 2 | populus_peu31085, populus_peu31107 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132616904 |
| Solanaceae | Solanum chilense | 1 | SOLCI001406700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026517 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.29805_chr10_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G0189 |
| Zosteraceae | Zostera marina | 1 | Zosma05g03760.v3.1 |