Basic Information
Locus ID:
Ag2G00098
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Transcriptional regulator STERILE
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 1313324 | 1333889 | + | Ag2G00098 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 51,450.84 Da | 34.91 | 95.51 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF81383 | F-box domain | 77 | 449 | 2.83E-8 | IPR036047 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 154 | 448 | 5.49E-16 | IPR036322 |
| Gene3D | G3DSA:1.20.1280.50 | - | 66 | 128 | 5.3E-6 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 255 | 452 | 1.6E-8 | IPR015943 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 431 | 452 | 9.071468 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 435 | 449 | - | IPR019775 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G35770.1 | Transducin/WD40 repeat-like superfamily protein. A recessive mutation in the Arabidopsis STERILE APETALA (SAP) causes severe aberrations in inflorescence and flower and ovule development. | 0 |
| RefSeq | XP_017251479.1 | PREDICTED: transcriptional regulator STERILE APETALA isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q9FKH1 | Transcriptional regulator STERILE APETALA OS=Arabidopsis thaliana OX=3702 GN=SAP PE=1 SV=1 | 0 | |
| TrEMBL | A0A164ZUT8 | WD_REPEATS_REGION domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_019686 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 8.087504 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 7.019608 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 3.010671 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 3.77933 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 3.942043 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.962298 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 4.618013 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 4.238847 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0.389227 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0.446555 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0.242266 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0.606199 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0.2647 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.069082 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.031671 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.122085 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.152685 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.586047 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.096144 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 1.79604 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 1.298381 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 1.441215 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg33081, jg3991 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_20726 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah038102, Ah038103, Ah038104 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g206260 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg51213, Sbi_jg60495 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24479 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015772 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl78350, Sgl80845 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000051632 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.9AG0003250 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30017170 |
| Apiaceae | Apium graveolens | 1 | Ag2G00098 |
| Arecaceae | Cocos nucifera | 1 | scaffold000814G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103698116 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G16936 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G35770.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005699m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g06350.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g031670.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2274 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2365 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g11250 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g20580 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9809 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.2245 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00015588 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb6G31620, Lb6G31635 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2232, evm.TU.LG23.462 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g05770 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.1623 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-12126 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1259 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10894 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.932 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10462 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-15557 |
| Salicaceae | Populus euphratica | 1 | populus_peu26895 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132618703, gene-LOC132642532 |
| Solanaceae | Solanum chilense | 1 | SOLCI002869500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107019635, gene-LOC107025733 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G0157 |
| Zosteraceae | Zostera marina | 1 | Zosma06g22020.v3.1 |