Basic Information
Locus ID:
Ag2G00061
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
atilp1,ilp1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 885882 | 893024 | + | Ag2G00061 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.83 | 101,830.78 Da | 46.13 | 65.25 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07967 | C3HC zinc finger-like | 81 | 205 | 1.0E-31 | IPR012935 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 462 | 535 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 290 | 331 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 476 | 491 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 313 | 331 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17210.1 | IAP-like protein 1. | 0 |
| RefSeq | XP_017252417.1 | PREDICTED: uncharacterized protein LOC108222941 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A164ZU39 | C3HC-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_019646 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 78.169228 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 55.834248 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 53.344276 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 56.587952 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 55.341614 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 62.935192 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 44.702694 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 46.056324 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 73.9104 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 68.392357 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 73.746933 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 72.762405 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 74.152451 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 66.685265 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 19.863873 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 21.033653 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 17.765812 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 22.16291 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 19.814241 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 24.177673 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 25.507879 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 25.909708 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 30.180517 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 27.796312 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 25.300264 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 30.470299 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 22.180988 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 22.969067 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 30.889147 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 15.864068 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 20.776182 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 14.720401 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 25.293013 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 23.144693 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 20.340652 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 12.620862 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 8.651855 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 10.663438 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 46.289471 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 24.527916 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 16.529984 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 25.328192 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 30.796726 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 55.524822 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 44.445351 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 26.649536 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 34.681091 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 63.121616 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 62.298752 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 67.696678 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg24308 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12695 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah007438 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg18973, Sbi_jg37425 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5266 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015183 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl22430, Sgl22431, Sgl27580, Sgl27581, Sgl27582 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008412, gene:ENSEOMG00000030998 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0015990, CQ.Regalona.r1.4BG0016300 |
| Apiaceae | Apium graveolens | 3 | Ag2G00061, AgUnG00502, AgUnG01240 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G020120, scaffold004540G000020 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103710517, gene-LOC103723898, gene-LOC120104082 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.1860.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G21791, Ftri7G15384 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G17210.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006705m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g15350.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g031660.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0178 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0259 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno17g04510 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g18830 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4682 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.46 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00008394 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G23229 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.128, AH03.231, BH03.297, BH03.3867, CH01.484, CH03.366 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0213490, gene-QOZ80_3BG0258600 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0153250.1, HORVU.MOREX.r3.5HG0516650.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_042489, gene-QYE76_061353 |
| Poaceae | Oryza coarctata | 3 | Oco06G026270, Oco13G001460, Oco14G001570 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g57160.1, LOC_Os07g05610.2 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G058200, gene-BS78_02G034300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0303531 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr01G003380, Chr04G006080, Chr12G035240, Chr12G035520 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G466100, Tel5E01G664500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG032980, gene_TRIDC2BG039290 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G251900.2, TraesCS2B02G271800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb059900_P003, Zm00001eb300000_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-35784 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g343, Zma_g4732, Zma_g5976 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG09.1150 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g31840, gene.Posoc10g05140 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.927 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-16691, nbisL1-mrna-16764 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10142 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17233 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000025l.103 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012257 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8659 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9146 |
| Salicaceae | Populus euphratica | 2 | populus_peu08087, populus_peu22158 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132617690 |
| Solanaceae | Solanum chilense | 1 | SOLCI002041400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107025877 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.28605_chr04_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G2056 |
| Zosteraceae | Zostera marina | 1 | Zosma03g23630.v3.1 |