Basic Information
Locus ID:
Ag2G00045
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
NADH kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 608353 | 612128 | - | Ag2G00045 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.12 | 35,643.51 Da | 57.05 | 98.10 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01513 | ATP-NAD kinase | 137 | 264 | 8.7E-5 | IPR002504 |
| Pfam | PF01513 | ATP-NAD kinase | 81 | 114 | 1.4E-8 | IPR002504 |
| SUPERFAMILY | SSF111331 | NAD kinase/diacylglycerol kinase-like | 65 | 314 | 3.38E-32 | IPR016064 |
| Gene3D | G3DSA:2.60.200.30 | - | 177 | 306 | 1.4E-20 | IPR017437 |
| Gene3D | G3DSA:3.40.50.10330 | - | 49 | 176 | 1.4E-18 | IPR017438 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Reaction:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G78590.1 | NAD(H) kinase 3. Encodes a NADH kinase which can synthesize NADPH from NADH; also utilizes NAD+ as substrate although NADH is the preferred substrate. | 0 |
| RefSeq | XP_017253938.1 | PREDICTED: NADH kinase [Daucus carota subsp. sativus] | 0 |
| Q6EQG2 | Probable NADH kinase OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0345700 PE=2 SV=1 | 0 | |
| TrEMBL | A0A164ZTD4 | NADH kinase-like OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_019616 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 8.697428 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 5.584157 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 4.831671 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 4.174577 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 4.522194 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 5.511806 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 4.322353 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 6.094827 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 5.695806 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 8.025647 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 7.591069 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 7.670328 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 7.354565 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 6.137045 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.917535 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1.459581 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 2.948189 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 3.385425 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 2.059281 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 2.326875 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 3.263637 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 3.083434 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 2.270767 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 3.048723 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 2.861287 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 2.758195 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 2.532831 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 3.083257 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 1.975271 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.309088 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.809801 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.038528 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 5.527557 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 6.349299 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 4.082957 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.257928 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 3.513534 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.944411 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 3.780729 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.478953 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.687656 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 2.986939 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 2.410966 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 9.293524 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 7.656418 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 3.596193 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 6.46154 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 16.166328 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 16.041849 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 15.770902 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg21204 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7571 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah007598, Ah007860 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g084970 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg19090, Sbi_jg37515 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5357 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00026889 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl20570, Sgl21936, Sgl25953, Sgl27212 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000009491, gene:ENSEOMG00000028643 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4BG0017620, CQ.Regalona.r1.4BG0017640 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30163090 |
| Apiaceae | Apium graveolens | 1 | Ag2G00045 |
| Arecaceae | Cocos nucifera | 1 | COCNU_14G002520 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103708952 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.3480.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri7G03611 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G78590.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018897m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g33680.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g058150.2N, BniB05g074490.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G0900 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G1024 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g04200 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g35650 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-5705, nbisL1-mrna-9273 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1384 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00009431 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G35534 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.1655, BH03.1806, CH03.1972 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0532900, gene-QOZ80_6BG0486420 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0474800.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_004649 |
| Poaceae | Oryza coarctata | 2 | Oco17G003030, Oco18G002910 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g17680.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G158500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0702575 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G011720, Chr11G010590 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG030270, gene_TRIDC5BG031970 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G186600.1, TraesCS5B02G185000.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb098430_P004 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-31039 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g30192 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG25.1345 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g17590 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.2353 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10482 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5089 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.1386 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001372 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1793 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22379 |
| Salicaceae | Populus euphratica | 2 | populus_peu17721, populus_peu17730 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132617702 |
| Solanaceae | Solanum chilense | 1 | SOLCI000985000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107024303 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6947 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G0048 |
| Zosteraceae | Zostera marina | 1 | Zosma05g25820.v3.1 |