Basic Information
Locus ID:
Ag2G00012
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Glutathione S-transferase, N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 216636 | 220664 | + | Ag2G00012 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.57 | 20,170.69 Da | 51.02 | 79.27 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17058 | Ubl_SNRNP25 | 61 | 147 | 5.41209E-42 | IPR040610 |
| Pfam | PF18036 | Ubiquitin-like domain | 62 | 149 | 1.1E-31 | IPR040610 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 57 | 153 | 1.15E-24 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 56 | 158 | 4.7E-37 | - |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 62 | 147 | 9.155766 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
ko00480 (Glutathione metabolism)
map00480 (Glutathione metabolism)
ko00980 (Metabolism of xenobiotics by cytochrome P450)
map00980 (Metabolism of xenobiotics by cytochrome P450)
ko00982 (Drug metabolism - cytochrome P450)
map00982 (Drug metabolism - cytochrome P450)
ko00983 (Drug metabolism - other enzymes)
map00983 (Drug metabolism - other enzymes)
ko01524 (Platinum drug resistance)
map01524 (Platinum drug resistance)
Reaction:
R03522 (RX + Glutathione <=> Halide + R-S-Glutathione)
R07002 ((1R,2S)-Naphthalene 1,2-oxide + Glutathione <=> (1R)-Hydroxy-(2R)-glutathionyl-1,2-dihydronaphthalene)
R07003 ((1S,2R)-Naphthalene 1,2-oxide + Glutathione <=> (1R)-Glutathionyl-(2R)-hydroxy-1,2-dihydronaphthalene)
R07004 ((1S,2R)-Naphthalene 1,2-oxide + Glutathione <=> (1S)-Hydroxy-(2S)-glutathionyl-1,2-dihydronaphthalene)
R07023 (1-Nitronaphthalene-7,8-oxide + Glutathione <=> 1-Nitro-7-hydroxy-8-glutathionyl-7,8-dihydronaphthalene)
R07024 (1-Nitronaphthalene-7,8-oxide + Glutathione <=> 1-Nitro-7-glutathionyl-8-hydroxy-7,8-dihydronaphthalene)
R07025 (1-Nitronaphthalene-5,6-oxide + Glutathione <=> 1-Nitro-5-hydroxy-6-glutathionyl-5,6-dihydronaphthalene)
R07026 (1-Nitronaphthalene-5,6-oxide + Glutathione <=> 1-Nitro-5-glutathionyl-6-hydroxy-5,6-dihydronaphthalene)
R07069 (Bromobenzene-3,4-oxide + Glutathione <=> 3,4-Dihydro-3-hydroxy-4-S-glutathionyl bromobenzene)
R07070 (Bromobenzene-2,3-oxide + Glutathione <=> 2,3-Dihydro-2-S-glutathionyl-3-hydroxy bromobenzene)
R07083 (Benzo[a]pyrene-4,5-oxide + Glutathione <=> 4,5-Dihydro-4-hydroxy-5-S-glutathionyl-benzo[a]pyrene)
R07084 (Benzo[a]pyrene-7,8-dihydrodiol + Glutathione <=> 7,8-Dihydro-7-hydroxy-8-S-glutathionyl-benzo[a]pyrene + H2O)
R07091 (2,2-Dichloroacetaldehyde + Glutathione <=> S-(2,2-Dichloro-1-hydroxy)ethyl glutathione)
R07092 (1,1-Dichloroethylene epoxide + Glutathione <=> 2-(S-Glutathionyl)acetyl chloride + Hydrochloric acid)
R07093 (Chloroacetyl chloride + Glutathione <=> S-(2-Chloroacetyl)glutathione + Hydrochloric acid)
R07094 (2-(S-Glutathionyl)acetyl chloride + Glutathione <=> 2-(S-Glutathionyl)acetyl glutathione + Hydrochloric acid)
R07100 (Trichloroethene + Glutathione <=> S-(1,2-Dichlorovinyl)glutathione + Hydrochloric acid)
R07113 (1,2-Dibromoethane + Glutathione + H+ <=> Glutathione episulfonium ion + 2 Hydrobromic acid)
R07116 (2-Bromoacetaldehyde + Glutathione <=> S-(Formylmethyl)glutathione + Hydrobromic acid)
R08280 (Aldophosphamide + Glutathione <=> 4-Glutathionyl cyclophosphamide + H2O)
R09409 (Aflatoxin B1-exo-8,9-epoxide + Glutathione <=> Aflatoxin B1exo-8,9-epoxide-GSH)
R11905 (Hepatotoxins + Glutathione <=> R-S-Glutathione)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G07860.1 | Ubiquitin-like superfamily protein. | 0 |
| RefSeq | XP_017251432.1 | PREDICTED: U11/U12 small nuclear ribonucleoprotein 25 kDa protein isoform X2 [Daucus carota subsp. sativus] | 0 |
| Q84WS8 | U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SNRNP25 PE=2 SV=1 | 0 | |
| TrEMBL | A0A164XWB5 | Ubiquitin-like domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_016903 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 10.947756 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 9.420177 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 8.771101 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 12.199165 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 10.857521 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 11.671142 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 11.67164 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 11.966531 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 6.452195 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 7.613638 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 7.64832 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 7.125531 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 7.34893 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 7.172414 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 6.314344 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 5.250285 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 5.779502 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 5.135514 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 4.661404 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 3.81316 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 5.731616 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 7.081853 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 6.722221 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 8.07761 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 7.755227 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 6.460738 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 4.995684 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 5.96518 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 6.672977 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.889752 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 3.138761 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.644139 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 6.769706 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 6.674261 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 6.246592 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.327469 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.289851 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.190545 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 4.194559 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 2.716328 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 2.202775 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 3.617479 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 4.399574 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 6.268005 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 5.077506 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 5.547342 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 5.244173 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 8.305566 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 8.370272 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 13.250615 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg17173 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8394 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah036054 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39955, Sbi_jg55286 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14378 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014140 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl12103, Sgl12119, Sgl17397 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000017349, gene:ENSEOMG00000049485 |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.1AG0022170, CQ.Regalona.r1.1BG0002180 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30048830 |
| Apiaceae | Apium graveolens | 1 | Ag2G00012 |
| Arecaceae | Cocos nucifera | 1 | COCNU_10G001760 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103714628 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.2119.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G20326 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G07860.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10021648m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g06780.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g042910.2N, BniB03g023780.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0519 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0476 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g09400 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g06710 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5305 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG06.143, evm.TU.LG12.462 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00020600 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G17489, Lb8G35827 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2617, BH09.2839, CH09.3038 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0300570, gene-QOZ80_4BG0331240 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0201100.1 |
| Poaceae | Oryza coarctata | 2 | Oco07G018390, Oco08G017720 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g56770.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G271300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0300426, Pt_Chr0300454 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G001700, Chr25G001310, Chr26G017610, Chr30G001330 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G834600 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC2AG041410, gene_TRIDC2AG062640 ... |
| Poaceae | Triticum aestivum | 8 | TraesCS2A02G285800.1, TraesCS2A02G435600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb067320_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-23117 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20625 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.554, evm.TU.LG12.1170 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g09220 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.1416 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-9235 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17618 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15246 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003751 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9515 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18785 |
| Salicaceae | Populus euphratica | 1 | populus_peu33067 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132614136 |
| Solanaceae | Solanum chilense | 1 | SOLCI005363100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107003177 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1857 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2505 |
| Zosteraceae | Zostera marina | 1 | Zosma05g31090.v3.1 |