Basic Information
Locus ID:
Ag1G02121
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
SOS1
Description:
Sodium hydrogen exchanger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 203171791 | 203192295 | + | Ag1G02121 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 117,041.21 Da | 31.97 | 106.56 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00038 | CAP_ED | 734 | 843 | 3.11184E-7 | IPR000595 |
| Pfam | PF00999 | Sodium/hydrogen exchanger family | 28 | 440 | 1.7E-62 | IPR006153 |
| Pfam | PF00027 | Cyclic nucleotide-binding domain | 757 | 840 | 2.9E-7 | IPR000595 |
| SUPERFAMILY | SSF51206 | cAMP-binding domain-like | 721 | 848 | 5.63E-16 | IPR018490 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 700 | 861 | 2.3E-11 | IPR014710 |
| Gene3D | G3DSA:6.10.140.1330 | - | 148 | 199 | 3.0E-20 | - |
| ProSiteProfiles | PS50042 | cAMP/cGMP binding motif profile. | 734 | 837 | 9.5744 | IPR000595 |
Gene Ontology
Biological Process:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01980.1 | sodium proton exchanger, putative (NHX7) (SOS1). Encodes a plasma membrane-localized Na+/H+ antiporter SOS1. Functions in the extrusion of toxic Na+ from cells and is essential for plant salt tolerance. Has 12 predicted transmembrane domains in the N-terminal region and a long cytoplasmic tail of approx. 700 aa at the C-terminal side. SOS1 interacts through its predicted cytoplasmic tail with RCD1, a regulator of oxidative-stress responses, suggesting that SOS1 might function in oxidative-stress tolerance. | 0 |
| RefSeq | XP_017226136.1 | PREDICTED: sodium/hydrogen exchanger 8-like [Daucus carota subsp. sativus] | 0 |
| Q9LKW9 | Sodium/hydrogen exchanger 7 OS=Arabidopsis thaliana OX=3702 GN=NHX7 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B7A4E3 | Cyclic nucleotide-binding domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_020007 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 20.581785 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 21.302071 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 29.175806 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 28.722544 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 28.863533 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 22.541155 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 27.43671 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 19.550644 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 42.626007 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 43.700039 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 47.340099 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 38.904305 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 43.486412 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 36.674534 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 16.359501 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 20.14327 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 12.705025 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 37.120369 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 23.058975 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 37.529335 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 38.37001 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 11.922669 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 13.969317 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 12.833009 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 13.885159 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 32.884602 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 28.005756 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 31.776903 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 36.790165 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 12.029121 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 17.033682 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 11.507799 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 38.548683 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 23.828796 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 36.68824 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 17.760412 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 9.918726 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 11.09822 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 27.334871 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 25.814211 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 23.854479 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 32.518341 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 25.514814 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 27.052401 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 20.772499 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 33.047512 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 19.431316 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 23.342705 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 23.795855 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 24.473042 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg5090 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17785 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah026992 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g131830 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13570, Sbi_jg52328 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9529 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00017556, GOSA_00017557 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33361, Sgl38714 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000001552, gene:ENSEOMG00000001584 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0021220, CQ.Regalona.r1.6BG0022370 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30219280 |
| Apiaceae | Apium graveolens | 2 | Ag1G02121, Ag1G02122 |
| Arecaceae | Cocos nucifera | 2 | scaffold013355G000010, scaffold013355G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103713094 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1264.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G31684, Ftri18G28004 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G14660.1, AT2G01980.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10003547m.g.v1.0, Thhalv10006906m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 4 | Sp1g13020.v2.2, Sp1g13030.v2.2, Sp1g13040.v2.2 ... |
| Brassicaceae | Brassica nigra | 4 | BniB04g014590.2N, BniB06g039940.2N, BniB06g039950.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0803 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0900 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno11g10600, gene.Cymno11g10610 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0478s00004.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g21330 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1122 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00015291, Pov_00015294 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G06040, Lb8G36155, Lb8G36162 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.4245, BH05.4343, CH05.4572 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_5AG0399900, gene-QOZ80_5BG0448600 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0221490.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_036433 |
| Poaceae | Oryza coarctata | 3 | Oco23G011520, Oco24G011350, Oco24G011360 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g44360.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G173000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0401395, Pt_Chr0401412 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G021150, Chr10G001430, Chr11G017360 |
| Poaceae | Thinopyrum elongatum | 5 | Tel1E01G074400, Tel2E01G274300, Tel3E01G040100 ... |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC1BG004810, gene_TRIDC2AG003640 ... |
| Poaceae | Triticum aestivum | 10 | TraesCS2A02G034700.1, TraesCS2A02G133600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb033240_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-29005, nbis-gene-47397 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g26221, Zma_g29555 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG02.239, evm.TU.LG03.2360, evm.TU.LG09.1479 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g05190 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_15_RagTag.290, evm.TU.Scaffold_17_RagTag.714 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-23405, nbisL1-mrna-23407 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-12407, nbisL1-mrna-5700 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-17601, nbisL1-mrna-20029 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000001l.183, evm.TU.utg000013l.384 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00004488, Maker00004609 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10777, nbisL1-mrna-11537 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-14332, nbisL1-mrna-2660 |
| Salicaceae | Populus euphratica | 3 | populus_peu07267, populus_peu07268, populus_peu21264 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132616060, gene-LOC132625830 |
| Solanaceae | Solanum chilense | 1 | SOLCI005035900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005114 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_196 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G0329 |
| Zosteraceae | Zostera marina | 1 | Zosma01g02820.v3.1 |