halophFGD

Basic Information

Locus ID: Ag1G02106

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	202837903	202841499	-	Ag1G02106

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.50	102,314.94 Da	39.30	90.80	-0.14

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd14066	STKc_IRAK	595	868	1.15243E-96	-
Pfam	PF13855	Leucine rich repeat	385	425	2.3E-6	IPR001611
Pfam	PF00069	Protein kinase domain	590	863	3.8E-48	IPR000719
Pfam	PF00560	Leucine Rich Repeat	186	205	1.8	IPR001611
Pfam	PF08263	Leucine rich repeat N-terminal domain	24	59	7.3E-6	IPR013210
Pfam	PF08263	Leucine rich repeat N-terminal domain	328	363	0.0019	IPR013210
SUPERFAMILY	SSF52058	L domain-like	37	432	2.98E-45	-
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	567	876	1.03E-78	IPR011009
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	23	323	7.2E-81	IPR032675
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	667	878	7.1E-57	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	552	666	6.1E-36	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	325	450	1.2E-33	IPR032675
SMART	SM00369	LRR_typ_2	412	434	77.0	IPR003591
SMART	SM00369	LRR_typ_2	85	107	81.0	IPR003591
SMART	SM00369	LRR_typ_2	256	279	120.0	IPR003591
SMART	SM00369	LRR_typ_2	108	131	0.23	IPR003591
SMART	SM00369	LRR_typ_2	388	411	69.0	IPR003591
SMART	SM00369	LRR_typ_2	183	206	69.0	IPR003591
SMART	SM00220	serkin_6	589	869	1.6E-42	IPR000719
ProSiteProfiles	PS51450	Leucine-rich repeat profile.	87	109	7.226811	IPR001611
ProSiteProfiles	PS50011	Protein kinase domain profile.	589	868	40.286861	IPR000719
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	595	617	-	IPR017441
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	714	726	-	IPR008271
MobiDBLite	mobidb-lite	consensus disorder prediction	909	941	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	448	482	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	447	482	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K00924 (receptor protein kinase TMK [EC:2.7.11.1])

Best hit

Source	Best Hit ID	Description
TAIR	AT1G66150.1	transmembrane kinase 1. receptor-like transmembrane kinase I (TMK1)
RefSeq	XP_017226545.1	PREDICTED: receptor protein kinase TMK1 [Daucus carota subsp. sativus]
Swiss-Prot	P43298	Receptor protein kinase TMK1 OS=Arabidopsis thaliana OX=3702 GN=TMK1 PE=1 SV=1
TrEMBL	A0A166HAM2	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_002668 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	24.255135	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	18.780514	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	14.648037	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	18.227251	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	19.800882	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	11.03698	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	12.026075	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	5.436331	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	95.209648	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	96.52581	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	105.991722	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	96.391724	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	85.030396	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	70.622108	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	27.462677	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	36.348244	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	31.44348	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	60.027573	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	46.782257	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	46.873131	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	41.410866	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	43.41317	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	55.594185	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	50.655689	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	42.631599	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	63.745796	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	69.562187	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	45.319168	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	59.256031	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	23.588589		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	18.741003		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	16.453417		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	32.132957		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	31.136103		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	25.43688		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	20.654324		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	18.983059		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	24.375019		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	103.175224	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	47.047306	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	32.070183	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	6.073346	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	19.583004	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	25.198175	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	33.060993	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	8.186833	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	29.247313	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	37.130798	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	28.205206	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	37.742321	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	7	jg12881, jg12882, jg17107, jg27636, jg38117, jg5109, jg7387
Aizoaceae	Mesembryanthemum crystallinum	4	gene_13214, gene_19180, gene_26641, gene_5423
Amaranthaceae	Atriplex hortensis	4	Ah004886, Ah009759, Ah022462, Ah028376
Amaranthaceae	Beta vulgaris	4	BVRB_2g032680, BVRB_4g071450, BVRB_7g168170, BVRB_9g214880
Amaranthaceae	Salicornia bigelovii	9	Sbi_jg12114, Sbi_jg20922, Sbi_jg22864, Sbi_jg2426 ... Sbi_jg26619, Sbi_jg33943, Sbi_jg41971, Sbi_jg47051, Sbi_jg48162
Amaranthaceae	Salicornia europaea	4	Seu_jg15141, Seu_jg16723, Seu_jg21331, Seu_jg27508
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00011851, GOSA_00018173, GOSA_00020352, GOSA_00023493
Amaranthaceae	Suaeda glauca	10	Sgl30955, Sgl32363, Sgl36307, Sgl36308, Sgl37663, Sgl61566 ... Sgl62282, Sgl66831, Sgl73920, Sgl77431
Amaranthaceae	Chenopodium album	12	gene:ENSEOMG00000005692, gene:ENSEOMG00000010312 ... gene:ENSEOMG00000013876, gene:ENSEOMG00000018011, gene:ENSEOMG00000018422, gene:ENSEOMG00000027197, gene:ENSEOMG00000030538, gene:ENSEOMG00000036244, gene:ENSEOMG00000038529, gene:ENSEOMG00000043916, gene:ENSEOMG00000049100, gene:ENSEOMG00000051085
Amaranthaceae	Chenopodium quinoa	9	CQ.Regalona.r1.2AG0015160, CQ.Regalona.r1.2BG0017240 ... CQ.Regalona.r1.4AG0000510, CQ.Regalona.r1.4BG0000610, CQ.Regalona.r1.7AG0009470, CQ.Regalona.r1.7AG0009480, CQ.Regalona.r1.7BG0003680, CQ.Regalona.r1.9AG0020890, CQ.Regalona.r1.9BG0009720
Anacardiaceae	Pistacia vera	2	pistato.v30218980, pistato.v30242690
Apiaceae	Apium graveolens	7	Ag11G03747, Ag11G03748, Ag1G02106, Ag3G01045, Ag5G02062 ... Ag8G01892, Ag8G02130
Arecaceae	Cocos nucifera	5	COCNU_05G009400, COCNU_08G002230, COCNU_13G001030 ... scaffold001322G000010, scaffold006704G000010
Arecaceae	Phoenix dactylifera	8	gene-LOC103695699, gene-LOC103705819, gene-LOC103706833 ... gene-LOC103711154, gene-LOC103713358, gene-LOC103723354, gene-LOC108511658, gene-LOC120111654
Asparagaceae	Asparagus officinalis	3	AsparagusV1_06.1549.V1.1, AsparagusV1_07.3597.V1.1 ... AsparagusV1_09.834.V1.1
Asteraceae	Flaveria trinervia	7	Ftri11G09296, Ftri11G20844, Ftri12G08064, Ftri13G28138 ... Ftri17G28080, Ftri18G23865, Ftri6G22193
Brassicaceae	Arabidopsis thaliana	5	AT1G24650.1, AT1G34290.1, AT1G66150.1, AT2G01820.1 ... AT3G23750.1
Brassicaceae	Eutrema salsugineum	6	Thhalv10002394m.g.v1.0, Thhalv10003606m.g.v1.0 ... Thhalv10009550m.g.v1.0, Thhalv10009860m.g.v1.0, Thhalv10018085m.g.v1.0, Thhalv10027392m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g23130.v2.2, Sp2g13250.v2.2, Sp3g21460.v2.2 ... Sp5g21210.v2.2
Brassicaceae	Brassica nigra	11	BniB01g037900.2N, BniB02g021680.2N, BniB02g065090.2N ... BniB02g065130.2N, BniB03g019890.2N, BniB03g025460.2N, BniB03g032250.2N, BniB03g043490.2N, BniB04g009390.2N, BniB07g029080.2N, BniB07g048200.2N
Casuarinaceae	Casuarina equisetifolia	10	Ceq07G0585, Ceq07G0674, Ceq07G0687, Ceq07G0688, Ceq07G0690 ... Ceq07G0691, Ceq07G0692, Ceq07G0693, Ceq08G0608, Ceq09G0789
Casuarinaceae	Casuarina glauca	7	Cgl03G2972, Cgl07G0668, Cgl07G0723, Cgl07G0739, Cgl07G0740 ... Cgl08G0576, Cgl09G0856
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno04g10420, gene.Cymno07g12020
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate04g02180, gene.Thate04g22060, gene.Thate05g24760 ... gene.Thate07g06660
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-12013, nbisL1-mrna-12014
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG02.60, evm.TU.LG03.1177, evm.TU.LG11.34
Plantaginaceae	Plantago ovata	4	Pov_00021168, Pov_00025262, Pov_00026883, Pov_00035923
Plumbaginaceae	Limonium bicolor	7	Lb1G01657, Lb1G04113, Lb1G04869, Lb2G13110, Lb2G13183 ... Lb3G20124, Lb5G28726
Poaceae	Echinochloa crus-galli	5	AH01.814, BH01.959, BH07.2263, CH01.1000, Contig181.42
Poaceae	Eleusine coracana subsp. coracana	3	gene-QOZ80_3AG0218680, gene-QOZ80_3AG0220540 ... gene-QOZ80_3BG0263980
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.4HG0337740.1
Poaceae	Lolium multiflorum	1	gene-QYE76_062364
Poaceae	Oryza coarctata	3	Oco05G021880, Oco06G022650, Oco22G007240
Poaceae	Oryza sativa	1	LOC_Os03g50810.1
Poaceae	Paspalum vaginatum	1	gene-BS78_01G103300
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0104993
Poaceae	Sporobolus alterniflorus	6	Chr01G006870, Chr03G014640, Chr04G027180, Chr07G026110 ... Chr12G030600, Chr30G012930
Poaceae	Thinopyrum elongatum	1	Tel4E01G086900
Poaceae	Triticum dicoccoides	2	gene_TRIDC4AG041390, gene_TRIDC4BG007770
Poaceae	Triticum aestivum	3	TraesCS4A02G265100.1, TraesCS4B02G049800.1 ... TraesCS4D02G050200.1
Poaceae	Zea mays	2	Zm00001eb055210_P001, Zm00001eb216120_P001
Poaceae	Zoysia japonica	2	nbis-gene-14855, nbis-gene-15945
Poaceae	Zoysia macrostachya	2	Zma_g2940, Zma_g625
Portulacaceae	Portulaca oleracea	11	evm.TU.LG03.1078, evm.TU.LG07.1, evm.TU.LG07.716 ... evm.TU.LG08.942, evm.TU.LG12.655, evm.TU.LG13.1541, evm.TU.LG15.220, evm.TU.LG18.97, evm.TU.LG21.1214, evm.TU.LG22.973, evm.TU.LG26.920
Posidoniaceae	Posidonia oceanica	4	gene.Posoc01g24810, gene.Posoc02g25920, gene.Posoc05g03730 ... gene.Posoc08g01400
Rhizophoraceae	Bruguiera sexangula	8	evm.TU.Scaffold_10_RagTag.333, evm.TU.Scaffold_15_RagTag.275 ... evm.TU.Scaffold_17_RagTag.742, evm.TU.Scaffold_3_RagTag.1408, evm.TU.Scaffold_3_RagTag.791, evm.TU.Scaffold_4_RagTag.2001, evm.TU.Scaffold_6_RagTag.1028, evm.TU.Scaffold_6_RagTag.1321
Rhizophoraceae	Carallia pectinifolia	7	nbisL1-mrna-1172, nbisL1-mrna-13237, nbisL1-mrna-23435 ... nbisL1-mrna-25505, nbisL1-mrna-26520, nbisL1-mrna-26563, nbisL1-mrna-26568
Rhizophoraceae	Ceriops tagal	9	nbisL1-mrna-12381, nbisL1-mrna-15040, nbisL1-mrna-15041 ... nbisL1-mrna-16971, nbisL1-mrna-17235, nbisL1-mrna-20472, nbisL1-mrna-20948, nbisL1-mrna-3711, nbisL1-mrna-5691
Rhizophoraceae	Ceriops zippeliana	10	nbisL1-mrna-1161, nbisL1-mrna-16739, nbisL1-mrna-17589 ... nbisL1-mrna-19762, nbisL1-mrna-20072, nbisL1-mrna-2653, nbisL1-mrna-4777, nbisL1-mrna-4778, nbisL1-mrna-6463, nbisL1-mrna-880
Rhizophoraceae	Kandelia candel	8	add.evm.TU.utg000019l.312, evm.TU.utg000001l.173 ... evm.TU.utg000008l.1160, evm.TU.utg000011l.648, evm.TU.utg000011l.860, evm.TU.utg000013l.400, evm.TU.utg000019l.391, evm.TU.utg000033l.219
Rhizophoraceae	Kandelia obovata	6	Maker00000689, Maker00004500, Maker00004747, Maker00008197 ... Maker00012891, Maker00015197
Rhizophoraceae	Rhizophora apiculata	8	nbisL1-mrna-10794, nbisL1-mrna-11548, nbisL1-mrna-12267 ... nbisL1-mrna-13441, nbisL1-mrna-13657, nbisL1-mrna-14230, nbisL1-mrna-16550, nbisL1-mrna-5196
Rhizophoraceae	Rhizophora mangle	8	nbisL1-mrna-13222, nbisL1-mrna-14306, nbisL1-mrna-14705 ... nbisL1-mrna-18094, nbisL1-mrna-21000, nbisL1-mrna-2676, nbisL1-mrna-3549, nbisL1-mrna-3913
Salicaceae	Populus euphratica	9	populus_peu05821, populus_peu07241, populus_peu09693 ... populus_peu11186, populus_peu13537, populus_peu15866, populus_peu21241, populus_peu21242, populus_peu24825
Solanaceae	Lycium barbarum	6	gene-LOC132599094, gene-LOC132604413, gene-LOC132604414 ... gene-LOC132610042, gene-LOC132612347, gene-LOC132616159
Solanaceae	Solanum chilense	6	SOLCI001442800, SOLCI002275600, SOLCI004937400 ... SOLCI005736500, SOLCI006566300, SOLCI007103000
Solanaceae	Solanum pennellii	4	gene-LOC107004528, gene-LOC107007498, gene-LOC107029857 ... gene-LOC107031454
Tamaricaceae	Reaumuria soongarica	5	gene_11246, gene_12349, gene_13413, gene_4004, gene_6370
Tamaricaceae	Tamarix chinensis	3	TC01G3657, TC06G2614, TC12G2109
Zosteraceae	Zostera marina	4	Zosma01g00460.v3.1, Zosma01g30400.v3.1, Zosma05g01890.v3.1 ... Zosma50g00120.v3.1