Basic Information
Locus ID:
Ag1G02098
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
UBX domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 202031044 | 202040531 | - | Ag1G02098 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.91 | 50,926.60 Da | 43.51 | 77.80 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02958 | UAS | 170 | 282 | 1.59064E-52 | - |
| CDD | cd01767 | UBX | 378 | 452 | 1.961E-14 | - |
| Pfam | PF14555 | UBA-like domain | 11 | 49 | 1.7E-10 | - |
| Pfam | PF13899 | Thioredoxin-like | 175 | 254 | 1.5E-12 | - |
| Pfam | PF00789 | UBX domain | 377 | 426 | 9.6E-8 | IPR001012 |
| SUPERFAMILY | SSF46934 | UBA-like | 6 | 48 | 6.12E-5 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 359 | 453 | 1.32E-16 | IPR029071 |
| SUPERFAMILY | SSF52833 | Thioredoxin-like | 152 | 287 | 1.34E-37 | IPR036249 |
| Gene3D | G3DSA:3.10.20.90 | - | 366 | 452 | 3.6E-13 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 5 | 49 | 3.9E-9 | - |
| Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 172 | 283 | 1.1E-41 | - |
| SMART | SM00594 | 45neu3 | 158 | 281 | 8.9E-44 | IPR006577 |
| PIRSF | PIRSF037991 | UCP037991_UBX_2_7 | 3 | 454 | 4.8E-127 | IPR017346 |
| ProSiteProfiles | PS50033 | UBX domain profile. | 372 | 452 | 20.605457 | IPR001012 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 78 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 94 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14570.1 | UBX domain-containing protein. | 0 |
| RefSeq | XP_017227429.1 | PREDICTED: plant UBX domain-containing protein 7 [Daucus carota subsp. sativus] | 0 |
| Q94JZ8 | Plant UBX domain-containing protein 7 OS=Arabidopsis thaliana OX=3702 GN=PUX7 PE=1 SV=1 | 0 | |
| TrEMBL | A0A175YHB1 | UBX domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_030326 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 32.85231 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 29.97439 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 27.231224 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 29.457964 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 27.478498 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 30.313133 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 28.35021 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 22.561115 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 54.868389 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 52.428082 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 57.249599 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 53.771957 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 45.48608 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 53.76334 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 31.286688 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 31.558079 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 43.52121 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 40.238117 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 41.183773 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 38.226803 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 35.256042 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 50.013374 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 48.482948 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 51.759884 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 46.264854 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 45.166531 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 45.735165 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 40.415344 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 41.415764 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 22.564268 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 19.834501 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 17.136808 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 36.367996 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 34.098869 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 30.243275 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 34.497917 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 30.07893 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 32.362862 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 40.916801 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 13.14645 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 11.605743 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 18.823036 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 34.294926 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 90.740372 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 62.434113 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 25.904095 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 56.147343 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 61.278301 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 50.125401 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 48.047291 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg5078, jg7412 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25044 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah026975 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g131610 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13589, Sbi_jg52311 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9545 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017576 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33380, Sgl38733 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000294, gene:ENSEOMG00000003156 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0021060, CQ.Regalona.r1.6BG0022180 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30219310 |
| Apiaceae | Apium graveolens | 2 | Ag1G02098, AgUnG01250 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G005860 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103715481, gene-LOC103717618, gene-LOC103723650 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.551.V1.1, AsparagusV1_Unassigned.667.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G20837, Ftri8G16822 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G14570.2 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10007578m.g.v1.0, Thhalv10027144m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g12920.v2.2, Sp7g12240.v2.2, Sp7g12270.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g006060.2N, BniB06g039800.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1597 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G1713 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno10g08760, gene.Cymno14g06990 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0229s00009.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g13520, gene.Thate08g16790 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.984 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00025313, Pov_00030981, Pov_00041577 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G04786, Lb1G04788 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2665, BH09.2896, CH09.3110 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0299910, gene-QOZ80_4BG0330630 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0211630.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_047248, gene-QYE76_047329 |
| Poaceae | Oryza coarctata | 2 | Oco07G018850, Oco08G018120 |
| Poaceae | Oryza sativa | 2 | LOC_Os04g57520.1, LOC_Os07g19390.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G278400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0300232, Pt_Chr0300279 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G001300, Chr25G001000, Chr26G017980, Chr30G001000 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G935400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG076570, gene_TRIDC2BG083820 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G549200.1, TraesCS2B02G579800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb066780_P001, Zm00001eb433390_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-23163 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20662 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.1320, evm.TU.LG21.1238 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g16030 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_17_RagTag.682 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-23366 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14184 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20005 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000013l.367 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004531 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10742 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-14368 |
| Salicaceae | Populus euphratica | 2 | populus_peu07285, populus_peu21284 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132614034, gene-LOC132638056 |
| Solanaceae | Solanum chilense | 2 | SOLCI002864700, SOLCI004406300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107018324, gene-LOC107027895 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_11049 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G2097, TC04G0294 |
| Zosteraceae | Zostera marina | 1 | Zosma01g24820.v3.1 |