Basic Information
Locus ID:
Ag1G02040
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 200340537 | 200351231 | + | Ag1G02040 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.15 | 240,192.45 Da | 50.45 | 83.49 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01373 | KISc_KLP2_like | 178 | 525 | 1.26477E-174 | - |
| Pfam | PF00225 | Kinesin motor domain | 185 | 516 | 5.6E-108 | IPR001752 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 179 | 547 | 1.37E-118 | IPR027417 |
| Gene3D | G3DSA:3.40.850.10 | Kinesin motor domain | 172 | 545 | 1.3E-135 | IPR036961 |
| SMART | SM00129 | kinesin_4 | 177 | 524 | 2.1E-157 | IPR001752 |
| ProSiteProfiles | PS50067 | Kinesin motor domain profile. | 179 | 516 | 122.371567 | IPR001752 |
| ProSitePatterns | PS00411 | Kinesin motor domain signature. | 412 | 423 | - | IPR019821 |
| PRINTS | PR00380 | Kinesin heavy chain signature | 251 | 272 | 8.4E-41 | IPR001752 |
| PRINTS | PR00380 | Kinesin heavy chain signature | 466 | 487 | 8.4E-41 | IPR001752 |
| PRINTS | PR00380 | Kinesin heavy chain signature | 380 | 397 | 8.4E-41 | IPR001752 |
| PRINTS | PR00380 | Kinesin heavy chain signature | 413 | 431 | 8.4E-41 | IPR001752 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2055 | 2107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2057 | 2073 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2074 | 2107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - | - |
| Coils | Coil | Coil | 1745 | 1807 | - | - |
| Coils | Coil | Coil | 1667 | 1687 | - | - |
| Coils | Coil | Coil | 1056 | 1104 | - | - |
| Coils | Coil | Coil | 967 | 1026 | - | - |
| Coils | Coil | Coil | 721 | 741 | - | - |
| Coils | Coil | Coil | 598 | 639 | - | - |
| Coils | Coil | Coil | 1846 | 1873 | - | - |
| Coils | Coil | Coil | 1366 | 1386 | - | - |
| Coils | Coil | Coil | 1944 | 1964 | - | - |
| Coils | Coil | Coil | 2016 | 2036 | - | - |
| Coils | Coil | Coil | 765 | 785 | - | - |
| Coils | Coil | Coil | 1878 | 1905 | - | - |
| Coils | Coil | Coil | 1604 | 1631 | - | - |
| Coils | Coil | Coil | 839 | 873 | - | - |
| Coils | Coil | Coil | 1134 | 1154 | - | - |
| Coils | Coil | Coil | 523 | 550 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G17360.3 | - | 0 |
| RefSeq | XP_017226929.1 | PREDICTED: phragmoplast orienting kinesin-1-like [Daucus carota subsp. sativus] | 0 |
| Q27IK7 | Kinesin-like protein KIN-12C OS=Arabidopsis thaliana OX=3702 GN=KIN12C PE=1 SV=1 | 0 | |
| TrEMBL | A0A175YJ20 | Kinesin motor domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_030431 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 1.852337 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.433884 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.903084 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.813433 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.912508 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.166341 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.291663 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.321911 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 17.618256 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 14.850263 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 17.841621 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 13.30498 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 11.820374 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 8.648274 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.277879 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.383967 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 1.033993 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 2.190708 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.723355 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.828424 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 1.644306 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 4.14492 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 4.528679 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 4.931705 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 3.944817 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 5.017155 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 3.064299 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 3.080721 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 4.285904 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.025254 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.0119 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.0756 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 1.20105 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.118403 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 12.803864 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.537794 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.561304 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.0517 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.167065 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.394895 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.3266 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.05852 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 1.153517 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 4.21616 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 4.445606 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 3.050104 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology