halophFGD

Basic Information

Locus ID: Ag1G01996

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: AMSH-like ubiquitin thioesterase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	199523153	199530619	-	Ag1G01996

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.31	58,451.05 Da	50.73	78.78	-0.54

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd08066	MPN_AMSH_like	340	517	1.10808E-113	IPR044098
Pfam	PF08969	USP8 dimerisation domain	11	100	3.4E-12	IPR015063
Pfam	PF01398	JAB1/Mov34/MPN/PAD-1 ubiquitin protease	339	446	7.6E-19	IPR000555
SUPERFAMILY	SSF102712	JAB1/MPN domain	342	472	2.48E-19	-
Gene3D	G3DSA:1.20.58.80	-	1	124	6.7E-33	-
Gene3D	G3DSA:3.40.140.10	Cytidine Deaminase, domain 2	328	517	1.4E-72	-
SMART	SM00232	pad1_6	342	470	5.2E-13	IPR000555
ProSiteProfiles	PS50249	MPN domain profile.	343	473	27.72131	IPR037518

Gene Ontology

Biological Process:

GO:0016579 (protein deubiquitination) GO:0070536 (protein K63-linked deubiquitination)

Molecular Function:

GO:0005515 (protein binding) GO:0008233 (peptidase activity) GO:0008237 (metallopeptidase activity) GO:0061578 (K63-linked deubiquitinase activity)

KEGG Pathway

KO Term:

K11866 (STAM-binding protein [EC:3.4.19.12])

Best hit

Source	Best Hit ID	Description
TAIR	AT1G48790.1	associated molecule with the SH3 domain of STAM 1.
RefSeq	XP_017223801.1	PREDICTED: AMSH-like ubiquitin thioesterase 3 [Daucus carota subsp. sativus]
Swiss-Prot	Q5PNU3	AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana OX=3702 GN=AMSH3 PE=1 SV=2
TrEMBL	A0A175YJ83	MPN domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_030481 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	24.569931	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	16.204447	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	16.795599	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	21.446562	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	18.794823	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	20.580795	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	19.610064	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	17.653967	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	15.182907	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	16.963047	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	17.763504	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	18.638203	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	15.52758	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	16.048384	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	11.976809	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	9.578695	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	11.175919	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	14.388183	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	11.012706	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	14.50268	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	15.214303	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	14.679361	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	13.491931	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	13.161887	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	14.110595	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	13.524272	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	11.869223	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	10.956059	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	13.6419	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	3.374323		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	3.788852		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	3.304127		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	11.633095		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	9.969726		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	11.438687		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	8.806118		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	3.430317		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	6.206725		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	10.577015	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	8.415898	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	6.781512	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	17.916349	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	19.363972	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	24.0842	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	18.782673	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	17.92918	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	15.94825	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	15.758966	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	14.533315	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	13.933209	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg12370, jg12371, jg27361, jg28086, jg34626
Aizoaceae	Mesembryanthemum crystallinum	3	gene_15922, gene_19921, gene_3637
Amaranthaceae	Atriplex hortensis	4	Ah002165, Ah013563, Ah019134, Ah038854
Amaranthaceae	Beta vulgaris	3	BVRB_3g047990, BVRB_5g111050, BVRB_6g148830
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg32062, Sbi_jg37993, Sbi_jg42928, Sbi_jg45539 ... Sbi_jg57302, Sbi_jg6126
Amaranthaceae	Salicornia europaea	3	Seu_jg11387, Seu_jg15710, Seu_jg25028
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00002414, GOSA_00006186, GOSA_00006187, GOSA_00023067
Amaranthaceae	Suaeda glauca	8	Sgl00874, Sgl05828, Sgl05956, Sgl35353, Sgl40708, Sgl53884 ... Sgl59141, Sgl59223
Amaranthaceae	Chenopodium album	10	gene:ENSEOMG00000001077, gene:ENSEOMG00000001268 ... gene:ENSEOMG00000003955, gene:ENSEOMG00000006996, gene:ENSEOMG00000013685, gene:ENSEOMG00000022149, gene:ENSEOMG00000022728, gene:ENSEOMG00000026853, gene:ENSEOMG00000029498, gene:ENSEOMG00000044821
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.3AG0001150, CQ.Regalona.r1.3BG0001190 ... CQ.Regalona.r1.5BG0016520, CQ.Regalona.r1.6AG0005330, CQ.Regalona.r1.6BG0005560
Anacardiaceae	Pistacia vera	3	pistato.v30146600, pistato.v30222290, pistato.v30233560
Apiaceae	Apium graveolens	3	Ag1G01327, Ag1G01996, Ag7G02372
Arecaceae	Cocos nucifera	3	COCNU_02G006060, COCNU_06G007260, COCNU_12G002850
Arecaceae	Phoenix dactylifera	4	gene-LOC103712639, gene-LOC103712884, gene-LOC103715835 ... gene-LOC103719560
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.2975.V1.1, AsparagusV1_01.3634.V1.1 ... AsparagusV1_02.2176.V1.1
Asteraceae	Flaveria trinervia	2	Ftri5G32707, FtriNA12935
Brassicaceae	Arabidopsis thaliana	3	AT1G10600.1, AT1G48790.1, AT4G16144.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10008718m.g.v1.0, Thhalv10011406m.g.v1.0 ... Thhalv10025009m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g09280.v2.2, Sp1g35710.v2.2, Sp7g14630.v2.2
Brassicaceae	Brassica nigra	5	BniB02g073480.2N, BniB04g028970.2N, BniB04g061870.2N ... BniB05g020230.2N, BniB07g007020.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq03G2433, Ceq07G0797, Ceq09G1073
Casuarinaceae	Casuarina glauca	3	Cgl03G2571, Cgl07G0852, Cgl09G1163
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno04g13540, gene.Cymno07g07270, gene.Cymno07g07850
Dunaliellaceae	Dunaliella salina	2	Dusal.0014s00029.v1.0, Dusal.2473s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate03g23050, gene.Thate06g04700
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-5460
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG03.1017, evm.TU.LG10.335, evm.TU.LG11.1229
Plantaginaceae	Plantago ovata	2	Pov_00026054, Pov_00033310
Plumbaginaceae	Limonium bicolor	3	Lb1G00689, Lb1G03041, Lb3G16493
Poaceae	Echinochloa crus-galli	8	AH02.1572, AH02.2625, BH02.1635, BH02.1818, BH02.1823 ... BH02.1826, CH02.1794, CH02.1952
Poaceae	Eleusine coracana subsp. coracana	5	gene-QOZ80_1AG0015920, gene-QOZ80_1AG0027460 ... gene-QOZ80_1BG0064650, gene-QOZ80_1BG0068830, gene-QOZ80_1BG0077650
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.3HG0260960.1, HORVU.MOREX.r3.3HG0277400.1 ... HORVU.MOREX.r3.4HG0338900.1
Poaceae	Lolium multiflorum	3	gene-QYE76_052853, gene-QYE76_052876, gene-QYE76_054344
Poaceae	Oryza coarctata	6	Oco01G009640, Oco01G010760, Oco01G016400, Oco02G009990 ... Oco02G011700, Oco02G016580
Poaceae	Oryza sativa	3	LOC_Os01g23640.1, LOC_Os01g31470.1, LOC_Os01g47262.2
Poaceae	Paspalum vaginatum	3	gene-BS78_03G146100, gene-BS78_03G220200 ... gene-BS78_04G024000
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0205378, Pt_Chr0504671, Pt_Chr0504689, Pt_Chr0603578 ... Pt_Chr0605019
Poaceae	Sporobolus alterniflorus	7	Chr02G013670, Chr02G016360, Chr02G022780, Chr04G024240 ... Chr05G013710, Chr05G020100, Chr06G026660
Poaceae	Thinopyrum elongatum	3	Tel3E01G332400, Tel3E01G405500, Tel4E01G097700
Poaceae	Triticum dicoccoides	6	gene_TRIDC3AG027130, gene_TRIDC3AG035890 ... gene_TRIDC3BG032370, gene_TRIDC3BG040210, gene_TRIDC4AG040230, gene_TRIDC4BG008920
Poaceae	Triticum aestivum	9	TraesCS3A02G192900.2, TraesCS3A02G240000.2 ... TraesCS3B02G223600.1, TraesCS3B02G268400.1, TraesCS3D02G199200.1, TraesCS3D02G240400.1, TraesCS4A02G257200.1, TraesCS4B02G057300.1, TraesCS4D02G057500.1
Poaceae	Zea mays	4	Zm00001eb131320_P001, Zm00001eb340870_P003 ... Zm00001eb341740_P001, Zm00001eb359600_P001
Poaceae	Zoysia japonica	3	nbis-gene-51054, nbis-gene-51998, nbis-gene-6450
Poaceae	Zoysia macrostachya	4	Zma_g10280, Zma_g24920, Zma_g7933, Zma_g8368
Portulacaceae	Portulaca oleracea	5	evm.TU.LG01.2289, evm.TU.LG04.2541, evm.TU.LG08.146 ... evm.TU.LG13.213, evm.TU.LG14.1464
Posidoniaceae	Posidonia oceanica	4	gene.Posoc01g08950, gene.Posoc01g30910, gene.Posoc04g20710 ... gene.Posoc04g23150
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_15_RagTag.747, evm.TU.Scaffold_3_RagTag.634 ... evm.TU.Scaffold_4_RagTag.748, evm.TU.Scaffold_6_RagTag.554
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-1341, nbisL1-mrna-16141, nbisL1-mrna-26921 ... nbisL1-mrna-28605
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-15849, nbisL1-mrna-17016, nbisL1-mrna-18433 ... nbisL1-mrna-7567
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-15648, nbisL1-mrna-1623, nbisL1-mrna-449 ... nbisL1-mrna-6327
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000001l.404, evm.TU.utg000008l.483 ... evm.TU.utg000011l.313, evm.TU.utg000019l.833
Rhizophoraceae	Kandelia obovata	4	Maker00000497, Maker00002688, Maker00007069, Maker00012397
Rhizophoraceae	Rhizophora apiculata	5	nbisL1-mrna-11259, nbisL1-mrna-14420, nbisL1-mrna-14558 ... nbisL1-mrna-22292, nbisL1-mrna-5299
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-13073, nbisL1-mrna-17764, nbisL1-mrna-19243
Salicaceae	Populus euphratica	6	populus_peu02352, populus_peu16493, populus_peu16506 ... populus_peu20865, populus_peu28315, populus_peu28316
Solanaceae	Lycium barbarum	4	gene-LOC132611101, gene-LOC132614025, gene-LOC132626648 ... gene-LOC132633265
Solanaceae	Solanum chilense	2	SOLCI002451500, SOLCI005653000
Solanaceae	Solanum pennellii	3	gene-LOC107008509, gene-LOC107015184, gene-LOC107016564
Tamaricaceae	Reaumuria soongarica	2	STRG.15681_chr08_-, gene_5293
Tamaricaceae	Tamarix chinensis	2	TC05G0026, TC06G1420
Zosteraceae	Zostera marina	4	Zosma01g27770.v3.1, Zosma04g19070.v3.1, Zosma04g19090.v3.1 ... Zosma04g22610.v3.1