halophFGD

Basic Information

Locus ID: Ag1G01985

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: RING-H2 finger protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	199276931	199277827	+	Ag1G01985

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.51	16,675.00 Da	78.17	93.62	-0.16

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID

KEGG Pathway

KO Term:

K16286 (E3 ubiquitin-protein ligase EL5 [EC:2.3.2.27])

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_017224311.1	PREDICTED: RING-H2 finger protein ATL2-like [Daucus carota subsp. sativus]	0
TrEMBL	A0A175YHS5	RING-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_030506 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	66.471924	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	36.51535	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	64.506027	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	60.860825	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	49.320499	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	132.745377	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	112.263916	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	285.745117	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	176.544342	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	154.314667	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	102.064056	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	53.852154	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	93.017281	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	17.048958	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	164.63475	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	149.203003	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	24.58321	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	207.50766	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	241.525818	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	286.407318	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	251.576096	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	160.992065	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	176.864151	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	131.093796	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	181.382004	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	14.909179	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	8.259341	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	47.616089	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	8.513974	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	8.751763		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	2.975915		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	7.362593		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	107.820618		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	71.738762		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	166.471634		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	28.886497		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	18.662844		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	27.924988		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	3.293211	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	14.067122	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	9.879398	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	338.050415	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	620.584717	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	404.154755	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	223.021362	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	361.428406	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	413.488892	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	338.826263	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	23.351871	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	21.020184	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	10	jg12399, jg13281, jg13282, jg13284, jg17962, jg25140, jg5659 ... jg27327, jg28061, jg35161
Aizoaceae	Mesembryanthemum crystallinum	3	gene_4368, gene_5239, gene_6669
Amaranthaceae	Atriplex hortensis	2	Ah012913, Ah028683
Amaranthaceae	Beta vulgaris	1	BVRB_7g169030
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg1950, Sbi_jg34559, Sbi_jg59960, Sbi_jg62908
Amaranthaceae	Salicornia europaea	2	Seu_jg23957, Seu_jg2819
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00011639, GOSA_00024864
Amaranthaceae	Suaeda glauca	5	Sgl03294, Sgl03578, Sgl08366, Sgl73356, Sgl76888
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000007533, gene:ENSEOMG00000013400 ... gene:ENSEOMG00000031319, gene:ENSEOMG00000036418, gene:ENSEOMG00000040433, gene:ENSEOMG00000045029
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.3AG0016950, CQ.Regalona.r1.3BG0019350 ... CQ.Regalona.r1.7AG0007100, CQ.Regalona.r1.9BG0007160
Anacardiaceae	Pistacia vera	3	pistato.v30008860, pistato.v30120500, pistato.v30234080
Apiaceae	Apium graveolens	3	Ag1G01985, Ag4G00201, Ag9G01027
Arecaceae	Cocos nucifera	8	COCNU_01G002010, COCNU_04G010430, COCNU_05G007890 ... COCNU_16G003770, COCNU_16G003780, contig69229602G000010, scaffold002830G000020, scaffold032126G000020
Arecaceae	Phoenix dactylifera	7	gene-LOC103696000, gene-LOC103697716, gene-LOC103702656 ... gene-LOC103711456, gene-LOC103714833, gene-LOC103719780, gene-LOC120105687
Asparagaceae	Asparagus officinalis	1	AsparagusV1_06.315.V1.1
Asteraceae	Flaveria trinervia	4	Ftri14G13719, Ftri1G05630, Ftri7G05446, FtriNA22463
Brassicaceae	Arabidopsis thaliana	8	AT1G53820.1, AT1G72310.1, AT2G47560.1, AT3G14320.1 ... AT3G16720.1, AT3G19140.1, AT3G62690.1, AT4G15975.1
Brassicaceae	Eutrema salsugineum	7	Thhalv10001609m.g.v1.0, Thhalv10006175m.g.v1.0 ... Thhalv10012011m.g.v1.0, Thhalv10018859m.g.v1.0, Thhalv10021205m.g.v1.0, Thhalv10022171m.g.v1.0, Thhalv10025860m.g.v1.0
Brassicaceae	Schrenkiella parvula	9	Sp1g39290.v2.2, Sp1g40310.v2.2, Sp3g12630.v2.2 ... Sp3g14990.v2.2, Sp3g27200.v2.2, Sp4g29500.v2.2, Sp5g00830.v2.2, Sp5g27380.v2.2, Sp7g14470.v2.2
Brassicaceae	Brassica nigra	17	BniB01g000260.2N, BniB01g047990.2N, BniB01g050780.2N ... BniB01g050790.2N, BniB03g039760.2N, BniB03g050540.2N, BniB05g069740.2N, BniB05g070390.2N, BniB06g026810.2N, BniB06g052340.2N, BniB07g003350.2N, BniB07g021610.2N, BniB07g027660.2N, BniB07g029040.2N, BniB07g053140.2N, BniB08g076660.2N, BniS00512g080.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq02G1095, Ceq06G0989, Ceq09G1111
Casuarinaceae	Casuarina glauca	3	Cgl02G1135, Cgl06G1021, Cgl09G1207
Cymodoceaceae	Cymodocea nodosa	7	gene.Cymno02g03550, gene.Cymno04g11190, gene.Cymno04g13920 ... gene.Cymno04g13930, gene.Cymno04g13950, gene.Cymno05g17780, gene.Cymno09g01800
Hydrocharitaceae	Thalassia testudinum	5	gene.Thate01g10520, gene.Thate01g30790, gene.Thate05g26130 ... gene.Thate06g04380, gene.Thate07g05650
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-2935, nbisL1-mrna-4644, nbisL1-mrna-836
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.240, evm.TU.LG04.376, evm.TU.LG11.1273
Plantaginaceae	Plantago ovata	2	Pov_00026100, Pov_00028854
Plumbaginaceae	Limonium bicolor	2	Lb3G20905, Lb3G20908
Poaceae	Echinochloa crus-galli	2	AH06.611, CH06.693
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_6AG0512020, gene-QOZ80_6BG0463930
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.7HG0660720.1.CDS1
Poaceae	Lolium multiflorum	1	gene-QYE76_027520
Poaceae	Oryza coarctata	2	Oco11G004300, Oco12G004280
Poaceae	Oryza sativa	1	LOC_Os06g09310.1
Poaceae	Paspalum vaginatum	1	gene-BS78_10G072000
Poaceae	Sporobolus alterniflorus	3	Chr11G021090, Chr14G003080, Chr21G002320
Poaceae	Thinopyrum elongatum	2	Tel4E01G305800, Tel7E01G314800
Poaceae	Triticum dicoccoides	2	gene_TRIDC7AG019250, gene_TRIDC7BG008900
Poaceae	Triticum aestivum	3	TraesCS7A02G156900.1.cds1, TraesCS7B02G061100.1.cds1 ... TraesCS7D02G157300.1.cds1
Poaceae	Zea mays	1	Zm00001eb374170_P001
Poaceae	Zoysia japonica	3	nbis-gene-3328, nbis-gene-34938, nbis-gene-4961
Poaceae	Zoysia macrostachya	2	Zma_g29260, Zma_g31505
Portulacaceae	Portulaca oleracea	5	evm.TU.LG01.103, evm.TU.LG07.1823, evm.TU.LG10.175 ... evm.TU.LG12.1647, evm.TU.LG15.1342
Posidoniaceae	Posidonia oceanica	9	gene.Posoc01g26150, gene.Posoc01g31580, gene.Posoc01g31590 ... gene.Posoc01g31600, gene.Posoc01g31630, gene.Posoc01g31640, gene.Posoc02g07880, gene.Posoc02g27900, gene.Posoc08g03250
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_18_RagTag.811, evm.TU.Scaffold_3_RagTag.606 ... evm.TU.Scaffold_6_RagTag.581
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-16110, nbisL1-mrna-27490, nbisL1-mrna-6720
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-12111, nbisL1-mrna-13787, nbisL1-mrna-21088
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-476, nbisL1-mrna-6309
Rhizophoraceae	Kandelia candel	4	add.evm.TU.utg000004l.5, add.evm.TU.utg000011l.142 ... add.evm.TU.utg000019l.357, add.evm.TU.utg000079l.9
Rhizophoraceae	Kandelia obovata	2	Maker00006883, Maker00012559
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-19755, nbisL1-mrna-21607, nbisL1-mrna-22286
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-18202, nbisL1-mrna-22813, nbisL1-mrna-3662
Salicaceae	Populus euphratica	6	populus_peu02952, populus_peu02964, populus_peu09316 ... populus_peu22251, populus_peu33848, populus_peu37700
Solanaceae	Lycium barbarum	5	gene-LOC132602408, gene-LOC132608859, gene-LOC132626687 ... gene-LOC132633559, gene-LOC132645198
Solanaceae	Solanum chilense	5	SOLCI000342400, SOLCI002801400, SOLCI004799500 ... SOLCI005627600, SOLCI006749900
Solanaceae	Solanum pennellii	5	gene-LOC107007244, gene-LOC107012094, gene-LOC107015159 ... gene-LOC107022708, gene-LOC107031467
Tamaricaceae	Reaumuria soongarica	3	STRG.21263_chr09_-, gene_7062, gene_9440
Tamaricaceae	Tamarix chinensis	5	TC01G0394, TC05G0587, TC05G0590, TC10G1925, TC12G1668
Zosteraceae	Zostera marina	7	Zosma01g05070.v3.1, Zosma02g18700.v3.1, Zosma02g20200.v3.1 ... Zosma02g23580.v3.1, Zosma03g25290.v3.1, Zosma06g17280.v3.1, Zosma06g21640.v3.1